Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.5e-148 530.8 662 100.0
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.0e-43 182.6 201 47.3
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 5.2e-40 170.2 196 46.4
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 8.8e-40 169.5 192 46.4
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.6e-39 167.9 192 45.3
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 2.6e-39 167.9 198 45.5
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 8.3e-38 162.9 189 46.6
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.1e-37 162.5 198 42.9
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.4e-37 162.2 200 42.5
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 3.5e-36 157.5 200 40.0
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.3e-35 155.6 201 41.8
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 3.6e-33 147.5 197 40.1
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 4.7e-33 147.1 170 44.7
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.0e-32 144.4 190 38.4
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 4.0e-32 144.1 192 42.7
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 1.2e-31 142.5 195 36.9
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.5e-31 142.1 191 40.3
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.6e-31 141.4 170 44.1
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 4.4e-31 140.6 181 40.9
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 9.8e-31 139.4 193 36.8
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 9.8e-31 139.4 193 36.8
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.3e-30 139.0 181 39.2
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.8e-30 137.9 158 45.6
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 2.8e-30 137.9 159 44.0
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 3.7e-30 137.5 181 39.8
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.1e-29 136.0 203 39.9
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 1.4e-29 135.6 201 37.8
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.8e-29 135.2 195 34.9
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 1.8e-29 135.2 191 39.3
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.4e-29 134.8 195 36.9
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.4e-29 134.8 191 40.8
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 4.1e-29 134.0 180 38.3
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.0e-29 133.3 142 46.5
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.6e-28 132.1 151 45.7
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.6e-28 132.1 203 39.4
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 3.5e-28 131.0 151 45.7
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.5e-28 131.0 144 45.8
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.5e-28 130.6 195 35.9
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 7.7e-28 129.8 196 37.2
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.0e-27 129.4 200 39.5
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 1.1e-26 125.9 198 36.9
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 1.1e-26 125.9 185 37.3
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 1.5e-26 125.6 201 37.3
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 3.3e-26 124.4 179 36.9
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 4.3e-26 124.0 187 36.4
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 5.6e-26 123.6 200 36.5
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.2e-25 122.5 192 36.5
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 2.1e-25 121.7 193 33.2
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 2.1e-25 121.7 172 37.8
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 2.8e-25 121.3 211 35.1
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.8e-25 121.3 196 34.2
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.7e-25 120.6 173 35.3
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 4.7e-25 120.6 202 35.6
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.0e-24 119.4 198 35.9
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.8e-24 118.6 199 39.7
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.8e-24 118.6 181 38.7
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 6.8e-24 116.7 158 38.0
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 1.2e-23 115.9 175 36.6
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.0e-23 115.2 171 36.8
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 3.4e-23 114.4 175 37.7
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 3.4e-23 114.4 209 33.0
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.4e-23 114.0 196 34.7
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 4.4e-23 114.0 190 35.3
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 5.7e-23 113.6 158 36.7
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 5.7e-23 113.6 199 32.7
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 7.5e-23 113.2 205 42.0
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.9e-22 111.3 158 35.4
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.9e-22 111.3 192 33.9
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.9e-22 110.5 192 33.9
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.9e-22 110.5 192 33.9
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 6.4e-22 110.2 201 33.3
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.1e-21 109.4 177 33.9
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 1.4e-21 109.0 209 32.5
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 2.4e-21 108.2 156 35.9
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 3.2e-21 107.8 187 34.2
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 5.4e-21 107.1 156 35.3
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 5.4e-21 107.1 207 32.9
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 9.2e-21 106.3 159 33.3
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 1.6e-20 105.5 156 34.6
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 2.0e-20 105.1 194 32.0
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.9e-20 103.6 140 35.7
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 7.8e-20 103.2 194 31.4
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.7e-19 102.1 201 30.3
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 3.0e-19 101.3 199 30.2
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 3.9e-19 100.9 201 30.3
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.5e-18 98.2 156 33.3
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 9.5e-18 96.3 191 28.3
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 9.5e-18 96.3 182 31.3
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 2.8e-17 94.7 171 33.3
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 2.8e-17 94.7 157 29.9
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.8e-17 94.7 173 29.5
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 3.6e-17 94.4 175 30.3
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 3.6e-17 94.4 173 29.5
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 6.2e-17 93.6 154 31.2
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 1.4e-16 92.4 190 28.4
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.8e-16 92.0 182 31.9
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.3e-16 91.7 195 29.7
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 3.1e-16 91.3 153 30.7
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 3.1e-16 91.3 154 31.2
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 6.8e-16 90.1 201 27.9
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 8.9e-16 89.7 154 31.8
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.2e-15 89.4 192 30.2
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.0e-15 88.6 153 31.4
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 5.8e-15 87.0 153 31.4
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 5.8e-15 87.0 147 29.3
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 9.8e-15 86.3 153 30.7
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 9.8e-15 86.3 157 29.3
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.2e-14 85.1 99 39.4
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 3.7e-14 84.3 141 29.1
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 3.7e-14 84.3 102 40.2
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.1e-13 82.8 155 29.0
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.1e-13 82.8 201 26.4
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.4e-13 82.4 156 28.8
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 2.4e-13 81.6 156 28.8
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 2.4e-13 81.6 138 33.3
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 3.2e-13 81.3 149 33.6
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.2e-13 81.3 188 25.5
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 5.4e-13 80.5 156 28.8
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 7.0e-13 80.1 150 30.0
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 9.2e-13 79.7 156 28.8
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.2e-12 79.3 198 27.8
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 1.6e-12 79.0 90 43.3
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.6e-12 79.0 154 27.9
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 2.7e-12 78.2 176 25.0
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 7.8e-12 76.6 188 25.5
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 1.3e-11 75.9 91 40.7
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 3.9e-11 74.3 131 26.0
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.1e-10 72.8 161 26.7
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.5e-10 71.6 197 25.4
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 2.5e-10 71.6 92 38.0
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.2e-09 69.3 87 40.2
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 3.6e-09 67.8 65 40.0
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 3.6e-09 67.8 191 23.6
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 4.7e-09 67.4 170 28.2
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.1e-08 64.7 107 33.6
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 5.2e-08 63.9 92 33.7
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 2.0e-07 62.0 112 30.4
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 2.6e-07 61.6 77 33.8
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 9.8e-07 59.7 63 36.5
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 1.3e-06 59.3 108 31.5
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 1.7e-06 58.9 101 35.6
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 8.3e-06 56.6 56 46.4


User provided reference genes

Program Settings