Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 7.2e-92 340.5 165 100.0
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 6.7e-21 104.8 126 48.4
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 4.3e-20 102.1 128 43.0
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 9.6e-20 100.9 128 42.2
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 8.1e-19 97.8 123 43.1
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.2e-17 94.0 100 47.0
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 2.0e-17 93.2 96 45.8
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 5.8e-17 91.7 97 47.4
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.2e-16 89.7 103 46.6
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 3.8e-16 89.0 104 46.2
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 3.8e-16 89.0 96 45.8
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 4.9e-16 88.6 96 45.8
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.1e-15 87.4 96 45.8
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.4e-15 87.0 96 45.8
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.9e-15 86.7 104 45.2
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 4.2e-15 85.5 108 43.5
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 4.2e-15 85.5 104 44.2
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 9.3e-15 84.3 112 44.6
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 1.2e-14 84.0 113 46.0
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 1.6e-14 83.6 109 44.0
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 2.1e-14 83.2 151 31.8
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 6.0e-14 81.6 101 42.6
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 6.0e-14 81.6 78 51.3
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 7.9e-14 81.3 110 42.7
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.8e-13 80.1 101 44.6
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 2.3e-13 79.7 109 41.3
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.3e-13 79.7 105 42.9
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 5.1e-13 78.6 111 39.6
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 8.7e-13 77.8 110 43.6
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 8.7e-13 77.8 102 45.1
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 2.5e-12 76.3 100 41.0
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 3.3e-12 75.9 91 42.9
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 9.6e-12 74.3 91 45.1
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 1.6e-11 73.6 131 32.1
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 1.6e-11 73.6 91 52.7
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.6e-11 73.6 93 40.9
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 1.6e-11 73.6 99 42.4
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 2.8e-11 72.8 101 39.6
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 3.7e-11 72.4 87 47.1
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.8e-11 72.0 97 42.3
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 6.2e-11 71.6 98 41.8
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 8.1e-11 71.2 91 39.6
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.1e-10 70.9 91 40.7
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.1e-10 70.9 91 40.7
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.4e-10 70.5 107 41.1
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 1.8e-10 70.1 109 41.3
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.4e-10 69.7 107 39.3
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 2.4e-10 69.7 101 40.6
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 4.5e-09 65.5 65 56.9
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.8e-09 65.1 114 36.8
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.3e-08 63.9 114 36.0
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.3e-08 63.9 94 40.4
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.3e-08 63.9 91 40.7
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 1.7e-08 63.5 114 36.0
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.7e-08 63.5 146 35.6
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.2e-08 63.2 73 52.1
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 2.9e-08 62.8 103 40.8
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 3.8e-08 62.4 76 47.4
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.8e-08 62.4 114 36.0
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 4.9e-08 62.0 81 44.4
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 6.5e-08 61.6 122 33.6
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 6.5e-08 61.6 95 42.1
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.1e-07 60.8 89 43.8
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.1e-07 60.8 99 35.4
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 1.4e-07 60.5 98 39.8
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 1.4e-07 60.5 94 40.4
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.9e-07 60.1 81 44.4
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 1.9e-07 60.1 89 40.4
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 2.5e-07 59.7 80 47.5
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 2.5e-07 59.7 108 36.1
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 3.2e-07 59.3 94 40.4
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.2e-07 59.3 71 46.5
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 5.5e-07 58.5 81 42.0
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 5.5e-07 58.5 88 45.5
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 7.1e-07 58.2 86 45.3
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 2.1e-06 56.6 71 45.1
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.7e-06 56.2 74 47.3
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 3.5e-06 55.8 104 44.2
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 3.5e-06 55.8 93 35.5
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 4.6e-06 55.5 84 42.9
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.6e-06 55.5 114 33.3
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 6.0e-06 55.1 84 42.9
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 6.0e-06 55.1 95 42.1
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 6.0e-06 55.1 68 48.5
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 6.0e-06 55.1 67 49.3


User provided reference genes

Program Settings