Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 4.4e-81 304.7 166 100.0
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 1.9e-15 86.7 93 50.5
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.2e-14 84.0 55 72.7
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 1.6e-14 83.6 71 63.4
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 4.6e-14 82.0 71 62.0
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 6.1e-14 81.6 75 58.7
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 7.9e-14 81.3 97 49.5
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 7.9e-14 81.3 82 58.5
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.0e-13 80.9 91 50.5
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 1.4e-13 80.5 73 56.2
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 1.4e-13 80.5 87 52.9
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.8e-13 80.1 71 62.0
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 1.8e-13 80.1 83 54.2
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 2.3e-13 79.7 71 59.2
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 2.3e-13 79.7 70 58.6
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 2.3e-13 79.7 60 65.0
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.3e-13 79.7 61 65.6
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 3.0e-13 79.3 97 46.4
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.9e-13 79.0 129 42.6
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 5.1e-13 78.6 55 70.9
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.7e-13 78.2 86 52.3
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 6.7e-13 78.2 55 67.3
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 8.8e-13 77.8 129 42.6
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.1e-12 77.4 129 42.6
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 2.0e-12 76.6 59 67.8
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 2.0e-12 76.6 70 55.7
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 2.0e-12 76.6 55 67.3
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 2.0e-12 76.6 62 61.3
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.3e-12 75.9 64 57.8
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 4.3e-12 75.5 68 60.3
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 4.3e-12 75.5 65 61.5
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 5.7e-12 75.1 55 69.1
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 5.7e-12 75.1 68 55.9
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 5.7e-12 75.1 129 42.6
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 7.4e-12 74.7 55 67.3
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 9.7e-12 74.3 55 69.1
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.3e-11 73.9 69 60.9
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.3e-11 73.9 70 55.7
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.7e-11 73.6 55 70.9
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.7e-11 73.6 71 57.7
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.7e-11 73.6 71 57.7
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.7e-11 73.6 71 57.7
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 1.7e-11 73.6 66 59.1
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 2.8e-11 72.8 128 49.2
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.7e-11 72.4 55 67.3
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 3.7e-11 72.4 100 41.0
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 3.7e-11 72.4 58 65.5
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 4.8e-11 72.0 106 43.4
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 6.3e-11 71.6 55 67.3
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 1.1e-10 70.9 100 42.0
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 1.1e-10 70.9 54 66.7
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.4e-10 70.5 175 35.4
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.4e-10 70.5 100 43.0
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.4e-10 70.5 70 54.3
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.4e-10 70.5 58 65.5
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 1.8e-10 70.1 59 61.0
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 1.8e-10 70.1 55 61.8
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 2.4e-10 69.7 70 54.3
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 2.4e-10 69.7 127 47.2
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 4.1e-10 68.9 55 63.6
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 4.1e-10 68.9 55 63.6
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 5.3e-10 68.6 58 60.3
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 5.3e-10 68.6 167 39.5
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 9.1e-10 67.8 55 61.8
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 9.1e-10 67.8 55 61.8
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 9.1e-10 67.8 61 60.7
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 9.1e-10 67.8 137 37.2
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 9.1e-10 67.8 130 40.8
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.2e-09 67.4 54 63.0
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.5e-09 67.0 88 46.6
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.5e-09 67.0 53 66.0
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.5e-09 67.0 90 47.8
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 2.0e-09 66.6 48 66.7
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 2.6e-09 66.2 130 40.0
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 3.4e-09 65.9 53 66.0
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 3.4e-09 65.9 141 35.5
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 3.4e-09 65.9 73 56.2
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 4.5e-09 65.5 96 43.8
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 4.5e-09 65.5 131 47.3
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 4.5e-09 65.5 58 55.2
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 7.7e-09 64.7 128 40.6
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 7.7e-09 64.7 130 41.5
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 1.0e-08 64.3 55 61.8
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.0e-08 64.3 55 61.8
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.0e-08 64.3 53 60.4
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.0e-08 64.3 53 60.4
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.3e-08 63.9 85 44.7
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.7e-08 63.5 53 62.3
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 2.9e-08 62.8 53 62.3
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 3.8e-08 62.4 95 44.2
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 3.8e-08 62.4 55 60.0
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 6.5e-08 61.6 54 63.0
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.1e-07 60.8 53 60.4
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.4e-07 60.5 58 55.2
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 2.5e-07 59.7 53 56.6
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 2.5e-07 59.7 70 51.4
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 5.5e-07 58.5 130 36.9
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 5.5e-07 58.5 125 35.2
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.6e-06 57.0 63 52.4
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.1e-06 56.6 111 40.5


User provided reference genes

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