Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10996 Sapria himalayana HOM05D000226 ORTHO05D000142 4.3e-49 198.0 123 100.0
Manes.04G130100 Manihot esculenta HOM05D000226 ORTHO05D000142 6.5e-21 104.4 111 73.0
QL05p021649 Quercus lobata HOM05D000226 ORTHO05D000142 1.4e-20 103.2 110 75.5
Lj5C58G2 Lonicera japonica HOM05D000226 ORTHO05D000142 3.2e-20 102.1 106 72.6
Haze_16362 Corylus avellana HOM05D000226 ORTHO05D000142 2.7e-19 99.0 104 75.0
Potri.001G184100 Populus trichocarpa HOM05D000226 ORTHO05D000142 3.6e-19 98.6 116 71.6
Nn3g18079 Nelumbo nucifera HOM05D000226 ORTHO05D000142 7.9e-19 97.4 110 70.0
Cfa002096 Carpinus fangiana HOM05D000226 ORTHO05D000142 1.4e-18 96.7 104 73.1
Hma1.2p1_1195F.1_g265810 Hydrangea macrophylla HOM05D000226 ORTHO05D000142 1.4e-18 96.7 110 73.6
Hma1.2p1_1195F.1_g265820 Hydrangea macrophylla HOM05D000226 ORTHO05D000142 1.4e-18 96.7 110 73.6
Hma1.2p1_3147F.1_g333175 Hydrangea macrophylla HOM05D000226 ORTHO05D000142 1.4e-18 96.7 110 73.6
Potri.003G052400 Populus trichocarpa HOM05D000226 ORTHO05D000142 1.8e-18 96.3 118 69.5
Oeu033508.1 Olea europaea HOM05D000226 ORTHO05D000142 5.1e-18 94.7 111 64.0
TWI12G0299 Tripterygium wilfordii HOM05D000226 ORTHO05D000142 3.3e-17 92.0 115 63.5
ClCG07G013160 Citrullus lanatus HOM05D000226 ORTHO05D000142 1.3e-16 90.1 107 53.3
CiPaw.02G148700 Carya illinoinensis HOM05D000226 ORTHO05D000142 2.2e-16 89.4 105 72.4
Glyma.13G357100 Glycine max HOM05D000226 ORTHO05D000142 3.7e-16 88.6 108 68.5
RcHm_v2.0_Chr2g0138951 Rosa chinensis HOM05D000226 ORTHO05D000142 6.3e-16 87.8 111 67.6
Cc04_g03030 Coffea canephora HOM05D000226 ORTHO05D000142 1.1e-15 87.0 126 64.3
MBI01_g15705_MAGBIO Magnolia biondii HOM05D000226 ORTHO05D000142 1.1e-15 87.0 111 57.7
Actinidia08992 Actinidia chinensis HOM05D000226 ORTHO05D000142 6.9e-15 84.3 116 68.1
FAN05G0292 Fragaria x ananassa HOM05D000226 ORTHO05D000142 6.9e-15 84.3 111 66.7
Phvul.010G148700 Phaseolus vulgaris HOM05D000226 ORTHO05D000142 6.9e-15 84.3 107 66.4
THA.LOC104800418 Tarenaya hassleriana HOM05D000226 ORTHO05D000142 1.5e-14 83.2 110 67.3
FAN09G3444 Fragaria x ananassa HOM05D000226 ORTHO05D000142 4.5e-14 81.6 111 64.9
Lalb_Chr14g0373211 Lupinus albus HOM05D000226 ORTHO05D000142 5.9e-14 81.3 121 62.0
Nitab4.5_0007217g0030 Nicotiana tabacum HOM05D000226 ORTHO05D000142 5.9e-14 81.3 110 61.8
Glyma.07G019500 Glycine max HOM05D000226 ORTHO05D000142 1.0e-13 80.5 104 64.4
FAN02G2430 Fragaria x ananassa HOM05D000226 ORTHO05D000142 1.3e-13 80.1 111 64.9
TWI75G1648 Tripterygium wilfordii HOM05D000226 ORTHO05D000142 2.2e-13 79.3 113 61.9
TAR383G0162 Trochodendron aralioides HOM05D000226 ORTHO05D000142 2.2e-13 79.3 110 63.6
CAN.G438.29 Capsicum annuum HOM05D000226 ORTHO05D000142 2.9e-13 79.0 113 61.1
Prupe.3G067200 Prunus persica HOM05D000226 ORTHO05D000142 2.9e-13 79.0 109 67.9
Dinv38020 Davidia involucrata HOM05D000226 ORTHO05D000142 8.5e-13 77.4 110 67.3
Nitab4.5_0001315g0160 Nicotiana tabacum HOM05D000226 ORTHO05D000142 8.5e-13 77.4 107 62.6
VMungo0331G0130 Vigna mungo HOM05D000226 ORTHO05D000142 1.1e-12 77.0 107 63.6
Manes.11G037800 Manihot esculenta HOM05D000226 ORTHO05D000142 3.2e-12 75.5 112 66.1
BcaC08g45271 Brassica carinata HOM05D000226 ORTHO05D000142 7.2e-12 74.3 108 62.0
A07p26360 Brassica napus HOM05D000226 ORTHO05D000142 7.2e-12 74.3 108 62.0
C06p28750 Brassica napus HOM05D000226 ORTHO05D000142 7.2e-12 74.3 108 62.0
BolC6t38045H Brassica oleracea HOM05D000226 ORTHO05D000142 7.2e-12 74.3 108 62.0
BraA07t30280Z Brassica rapa HOM05D000226 ORTHO05D000142 7.2e-12 74.3 108 62.0
Lj3g0010793 Lotus japonicus HOM05D000226 ORTHO05D000142 9.4e-12 73.9 115 62.6
Sp5g35920 Schrenkiella parvula HOM05D000226 ORTHO05D000142 1.2e-11 73.6 112 59.8
Sed0011596 Sechium edule HOM05D000226 ORTHO05D000142 1.6e-11 73.2 104 45.2
Medtr2g101720 Medicago truncatula HOM05D000226 ORTHO05D000142 2.1e-11 72.8 124 58.1
Carub.0002s2766 Capsella rubella HOM05D000226 ORTHO05D000142 3.6e-11 72.0 112 58.0
Thhalv10018234m.g Eutrema salsugineum HOM05D000226 ORTHO05D000142 3.6e-11 72.0 111 59.5
CDE05G2243 Ceratophyllum demersum HOM05D000226 ORTHO05D000142 4.7e-11 71.6 111 61.3
DCAR_026332 Daucus carota HOM05D000226 ORTHO05D000142 6.1e-11 71.2 111 59.5
FvH4_6g31780 Fragaria vesca HOM05D000226 ORTHO05D000142 6.1e-11 71.2 111 61.3
FAN14G2210 Fragaria x ananassa HOM05D000226 ORTHO05D000142 6.1e-11 71.2 111 61.3
PSO210G6260 Papaver somniferum HOM05D000226 ORTHO05D000142 6.1e-11 71.2 124 56.5
VMungo1080G1883 Vigna mungo HOM05D000226 ORTHO05D000142 6.1e-11 71.2 110 66.4
MD09G1209300 Malus domestica HOM05D000226 ORTHO05D000142 1.0e-10 70.5 114 62.3
MD17G1191000 Malus domestica HOM05D000226 ORTHO05D000142 1.0e-10 70.5 114 62.3
Solyc03g120620.3 Solanum lycopersicum HOM05D000226 ORTHO05D000142 1.4e-10 70.1 114 60.5
CsaV3_3G024970 Cucumis sativus L. HOM05D000226 ORTHO05D000142 1.8e-10 69.7 114 45.6
AT1G79840 Arabidopsis thaliana HOM05D000226 ORTHO05D000142 2.3e-10 69.3 114 57.0
Thecc.06G092500 Theobroma cacao HOM05D000226 ORTHO05D000142 2.3e-10 69.3 112 61.6
TPR.G37164 Trifolium pratense HOM05D000226 ORTHO05D000142 2.3e-10 69.3 111 61.3
Glyma.08G204700 Glycine max HOM05D000226 ORTHO05D000142 3.0e-10 68.9 104 55.8
Phvul.005G168900 Phaseolus vulgaris HOM05D000226 ORTHO05D000142 3.9e-10 68.6 112 65.2
DCAR_007570 Daucus carota HOM05D000226 ORTHO05D000142 5.1e-10 68.2 111 50.5
SalBow2G1175 Salvia bowleyana HOM05D000226 ORTHO05D000142 8.8e-10 67.4 109 61.5
GSVIVG01017073001 Vitis vinifera HOM05D000226 ORTHO05D000142 1.1e-09 67.0 111 59.5
Cpa.g.sc98.6 Carica papaya HOM05D000226 ORTHO05D000142 1.5e-09 66.6 118 59.3
PSO210G7292 Papaver somniferum HOM05D000226 ORTHO05D000142 1.5e-09 66.6 124 55.6
MSTRG.11052 Avicennia marina HOM05D000226 ORTHO05D000142 2.6e-09 65.9 114 54.4
Ca_01134_v3 Cicer arietinum L. HOM05D000226 ORTHO05D000142 3.3e-09 65.5 112 59.8
EL10Ac9g22031 Beta vulgaris HOM05D000226 ORTHO05D000142 4.4e-09 65.1 104 60.6
Psat5g297800 Pisum sativum HOM05D000226 ORTHO05D000142 1.3e-08 63.5 122 57.4
Aqoxy7G01597 Aquilegia oxysepala HOM05D000226 ORTHO05D000142 1.7e-08 63.2 108 44.4
AUR62016486 Chenopodium quinoa HOM05D000226 ORTHO05D000142 1.7e-08 63.2 56 64.3
Glyma.15G016500 Glycine max HOM05D000226 ORTHO05D000142 2.8e-08 62.4 103 61.2
CARHR074650 Cardamine hirsuta HOM05D000226 ORTHO05D000142 1.1e-07 60.5 109 57.8
Ciclev10024950m.g Citrus clementina HOM05D000226 ORTHO05D000142 2.4e-07 59.3 114 59.6
Lsat_1_v5_gn_4_102880 Lactuca sativa HOM05D000226 ORTHO05D000142 7.0e-07 57.8 104 60.6
Aa31LG4G120 Aethionema arabicum HOM05D000226 ORTHO05D000142 9.1e-07 57.4 117 55.6
DCAR_026333 Daucus carota HOM05D000226 ORTHO05D000142 2.6e-06 55.8 101 53.5
Os01g0760800 Oryza sativa ssp. japonica HOM05D000226 ORTHO05D000142 2.6e-06 55.8 105 57.1
Hund00641 Selenicereus undatus HOM05D000226 ORTHO05D000142 5.9e-06 54.7 102 62.7


User provided reference genes

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