Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 4.0e-173 611.3 304 100.0
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 7.9e-36 155.2 172 50.6
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.3e-33 147.9 151 53.6
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 2.2e-33 147.1 156 53.2
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 2.0e-31 140.6 239 37.7
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 4.2e-29 132.9 159 49.7
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 4.6e-28 129.4 179 44.1
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 6.1e-28 129.0 170 45.9
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 7.9e-28 128.6 156 47.4
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.8e-27 127.5 170 45.9
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 3.9e-27 126.3 169 44.4
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 6.7e-27 125.6 176 44.9
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 2.0e-26 124.0 170 47.1
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 4.3e-26 122.9 238 37.8
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 4.3e-26 122.9 209 40.2
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 7.4e-26 122.1 158 46.2
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.7e-25 120.9 163 46.6
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 6.3e-25 119.0 232 37.1
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.8e-24 117.5 155 45.2
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 6.9e-24 115.5 163 43.6
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-23 114.8 160 46.9
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.2e-23 114.8 160 46.9
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 2.0e-23 114.0 157 47.8
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 2.6e-23 113.6 160 46.9
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.7e-23 112.1 160 46.2
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 2.2e-22 110.5 161 41.6
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 2.9e-22 110.2 160 45.6
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 3.8e-22 109.8 161 41.6
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 5.0e-22 109.4 171 40.4
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.5e-22 109.0 153 42.5
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.5e-22 109.0 153 42.5
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 6.5e-22 109.0 157 47.1
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.4e-21 107.8 184 42.4
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.4e-21 107.8 160 46.9
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.9e-21 107.5 174 42.0
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 3.2e-21 106.7 177 37.9
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.2e-21 106.7 158 46.2
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 5.5e-21 105.9 155 42.6
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.2e-21 105.5 205 34.6
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 7.2e-21 105.5 161 41.6
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 9.4e-21 105.1 174 42.0
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 1.6e-20 104.4 159 44.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.6e-20 104.4 202 37.6
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.6e-20 104.4 202 37.6
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 7.9e-20 102.1 199 39.7
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 7.9e-20 102.1 183 41.5
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.0e-19 101.7 152 42.8
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.0e-19 101.7 160 42.5
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.4e-19 101.3 170 40.6
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.8e-19 100.9 214 36.0
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 3.0e-19 100.1 164 39.6
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 3.0e-19 100.1 211 35.1
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 3.9e-19 99.8 175 37.7
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 6.7e-19 99.0 156 42.9
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 3.3e-18 96.7 180 37.2
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 4.4e-18 96.3 170 38.8
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 5.7e-18 95.9 210 36.7
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 5.7e-18 95.9 198 35.4
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.7e-17 94.4 174 37.4
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 2.8e-17 93.6 162 35.8
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 6.3e-17 92.4 220 33.6
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 6.3e-17 92.4 168 38.1
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 8.2e-17 92.0 148 41.9
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 1.4e-16 91.3 182 38.5
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.8e-16 90.9 180 37.8
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 1.8e-16 90.9 169 39.1
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 2.4e-16 90.5 182 36.8
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 4.1e-16 89.7 154 40.3
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 5.3e-16 89.4 172 37.2
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 7.0e-16 89.0 182 38.5
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 7.0e-16 89.0 161 37.9
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 7.0e-16 89.0 155 41.3
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.6e-15 87.0 155 40.0
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 3.5e-15 86.7 163 40.5
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 4.5e-15 86.3 186 37.1
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 4.5e-15 86.3 156 41.0
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 4.5e-15 86.3 156 41.0
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 5.9e-15 85.9 153 41.2
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 7.7e-15 85.5 153 41.2
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.7e-14 84.3 158 39.2
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.7e-14 84.3 158 39.2
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.9e-13 80.9 153 39.2
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 2.5e-13 80.5 159 35.8
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 3.2e-13 80.1 198 33.3
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.1e-12 77.4 179 31.8
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 3.6e-12 76.6 167 35.9
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.4e-11 74.7 174 34.5
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.1e-10 71.6 180 35.6
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.5e-10 71.2 164 35.4
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.6e-10 70.5 164 34.8
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 2.6e-10 70.5 155 34.2
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 3.3e-10 70.1 229 30.1
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 4.4e-10 69.7 159 37.7
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.7e-10 69.3 112 40.2
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.7e-09 67.8 84 51.2
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 2.8e-09 67.0 181 33.1
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 6.3e-09 65.9 181 32.6
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 6.3e-09 65.9 167 30.5
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 8.2e-09 65.5 181 33.1
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.2e-09 65.5 153 33.3
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.1e-08 65.1 181 33.1
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 2.4e-08 63.9 181 32.6
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 2.4e-08 63.9 175 30.9
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.4e-08 63.9 154 32.5
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 3.1e-08 63.5 188 33.0
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.6e-07 61.2 141 36.2
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 5.9e-07 59.3 181 30.9


User provided reference genes

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