Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 4.2e-129 464.5 212 100.0
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 1.7e-21 107.1 98 55.1
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.7e-21 107.1 98 57.1
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.7e-21 107.1 98 57.1
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.7e-21 107.1 107 52.3
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 2.2e-21 106.7 80 63.8
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 2.9e-21 106.3 98 57.1
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.9e-21 106.3 83 61.4
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 1.5e-20 104.0 98 55.1
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 1.9e-20 103.6 98 55.1
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 2.5e-20 103.2 99 54.5
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 4.2e-20 102.4 99 55.6
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 5.5e-20 102.1 81 60.5
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 7.2e-20 101.7 98 53.1
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.6e-19 100.5 83 56.6
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 2.1e-19 100.1 81 60.5
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.1e-19 100.1 84 58.3
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 3.6e-19 99.4 99 53.5
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.6e-19 99.4 99 54.5
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 3.6e-19 99.4 99 53.5
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 3.6e-19 99.4 99 52.5
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.7e-19 99.0 81 60.5
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 6.1e-19 98.6 90 55.6
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 6.1e-19 98.6 84 59.5
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 8.0e-19 98.2 99 53.5
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 1.0e-18 97.8 99 51.5
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 1.0e-18 97.8 81 60.5
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.4e-18 97.4 99 54.5
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.8e-18 97.1 84 57.1
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.8e-18 97.1 83 56.6
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.3e-18 96.7 91 52.7
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 3.0e-18 96.3 98 51.0
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 3.0e-18 96.3 99 53.5
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 4.0e-18 95.9 82 58.5
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 5.2e-18 95.5 99 53.5
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 5.2e-18 95.5 99 53.5
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 5.2e-18 95.5 97 53.6
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 6.8e-18 95.1 97 51.5
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 6.8e-18 95.1 81 58.0
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 6.8e-18 95.1 99 51.5
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 8.8e-18 94.7 84 56.0
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 8.8e-18 94.7 82 57.3
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 8.8e-18 94.7 98 49.0
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 2.6e-17 93.2 84 56.0
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 3.4e-17 92.8 84 57.1
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 3.4e-17 92.8 84 52.4
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 3.4e-17 92.8 99 51.5
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 5.7e-17 92.0 84 53.6
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 5.7e-17 92.0 82 58.5
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 9.8e-17 91.3 99 51.5
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.7e-16 90.5 84 54.8
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.7e-16 90.5 84 52.4
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.7e-16 90.5 84 54.8
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 2.2e-16 90.1 95 49.5
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 2.2e-16 90.1 100 52.0
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 2.8e-16 89.7 84 54.8
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 2.8e-16 89.7 99 50.5
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 2.8e-16 89.7 84 53.6
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 2.8e-16 89.7 84 54.8
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 4.9e-16 89.0 84 54.8
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 8.3e-16 88.2 84 52.4
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 8.3e-16 88.2 96 49.0
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 8.3e-16 88.2 82 54.9
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 8.3e-16 88.2 84 51.2
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 8.3e-16 88.2 99 49.5
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 1.1e-15 87.8 81 59.3
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 1.1e-15 87.8 97 50.5
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.1e-15 87.8 99 50.5
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.1e-15 87.8 84 54.8
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 1.4e-15 87.4 80 55.0
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 1.8e-15 87.0 99 48.5
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 4.1e-15 85.9 96 46.9
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 5.4e-15 85.5 99 49.5
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 7.0e-15 85.1 96 46.9
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 7.0e-15 85.1 96 46.9
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 7.0e-15 85.1 96 47.9
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 7.0e-15 85.1 99 47.5
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 9.2e-15 84.7 99 44.4
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.2e-14 84.3 96 46.9
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.2e-14 84.3 96 46.9
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 1.6e-14 84.0 96 45.8
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.0e-14 83.6 76 56.6
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 2.0e-14 83.6 84 53.6
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.7e-14 83.2 106 41.5
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 2.7e-14 83.2 98 45.9
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 2.7e-14 83.2 99 48.5
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 3.5e-14 82.8 99 49.5
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.5e-14 82.8 86 52.3
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 3.5e-14 82.8 84 54.8
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 1.0e-13 81.3 96 45.8
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.3e-13 80.9 97 46.4
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.9e-13 79.7 84 46.4
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 3.8e-13 79.3 96 44.8
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 5.0e-13 79.0 84 52.4
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 6.6e-13 78.6 97 45.4
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 8.6e-13 78.2 82 50.0
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 9.5e-12 74.7 99 46.5
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 2.0e-09 67.0 81 45.7
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 6.4e-08 62.0 84 40.5
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 1.4e-07 60.8 99 39.4
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 5.9e-06 55.5 90 40.0
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 7.8e-06 55.1 107 36.4
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 7.8e-06 55.1 107 36.4


User provided reference genes

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