Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10577 Sapria himalayana HOM05D006123 ORTHO05D007578 4.1e-99 364.8 189 100.0
SHI51501 Sapria himalayana HOM05D006123 ORTHO05D007578 1.7e-84 316.2 169 96.4
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 1.1e-27 127.5 133 54.9
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 1.2e-26 124.0 137 52.6
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 7.9e-26 121.3 133 52.6
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 1.8e-25 120.2 137 51.1
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 3.9e-25 119.0 137 50.4
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 5.1e-25 118.6 137 49.6
vmacro15977 Vaccinium macrocarpon HOM05D006123 ORTHO05D007578 5.1e-25 118.6 142 47.9
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 8.7e-25 117.9 133 49.6
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 2.5e-24 116.3 137 49.6
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 3.3e-24 115.9 137 47.4
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 3.3e-24 115.9 137 46.7
GSVIVG01001139001 Vitis vinifera HOM05D006123 ORTHO05D007578 4.3e-24 115.5 137 48.9
MBI11_g04258_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 7.4e-24 114.8 134 46.3
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 1.3e-23 114.0 148 46.6
Rhsim12G0090900 Rhododendron simsii HOM05D006123 ORTHO05D007578 1.3e-23 114.0 137 46.0
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 1.3e-23 114.0 133 47.4
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 1.6e-23 113.6 133 46.6
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 2.1e-23 113.2 137 46.7
DCAR_023486 Daucus carota HOM05D006123 ORTHO05D007578 2.1e-23 113.2 134 49.3
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 3.7e-23 112.5 137 47.4
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 4.8e-23 112.1 137 46.0
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 6.2e-23 111.7 134 45.5
CSS0017548 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 8.1e-23 111.3 137 46.7
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 8.1e-23 111.3 137 46.7
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 1.1e-22 110.9 141 44.7
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 1.4e-22 110.5 137 46.0
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 1.4e-22 110.5 137 46.0
Lj3C1079T4 Lonicera japonica HOM05D006123 ORTHO05D007578 1.8e-22 110.2 134 50.0
AUR62018638 Chenopodium quinoa HOM05D006123 ORTHO05D007578 2.4e-22 109.8 133 48.9
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 3.1e-22 109.4 117 53.0
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 4.0e-22 109.0 137 46.0
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 4.0e-22 109.0 137 46.0
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 4.0e-22 109.0 137 41.6
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 5.3e-22 108.6 133 44.4
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 5.3e-22 108.6 137 44.5
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 6.9e-22 108.2 133 48.9
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 6.9e-22 108.2 137 45.3
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 9.0e-22 107.8 133 42.9
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 9.0e-22 107.8 133 42.9
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 9.0e-22 107.8 137 45.3
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 1.2e-21 107.5 133 47.4
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 1.2e-21 107.5 133 41.4
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 1.2e-21 107.5 137 45.3
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 1.2e-21 107.5 133 46.6
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 1.5e-21 107.1 133 43.6
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 1.5e-21 107.1 133 42.1
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 2.0e-21 106.7 137 44.5
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 2.0e-21 106.7 133 42.1
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 2.6e-21 106.3 137 44.5
SGA_v2.0_scaffold258G45757 Striga asiatica HOM05D006123 ORTHO05D007578 2.6e-21 106.3 133 45.9
FAN12G4288 Fragaria x ananassa HOM05D006123 ORTHO05D007578 3.4e-21 105.9 136 44.1
Ca_16273_v3 Cicer arietinum L. HOM05D006123 ORTHO05D007578 4.5e-21 105.5 121 47.1
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 5.8e-21 105.1 133 45.1
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 7.6e-21 104.8 133 44.4
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 7.6e-21 104.8 134 43.3
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 7.6e-21 104.8 121 47.9
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 9.9e-21 104.4 138 43.5
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 9.9e-21 104.4 137 43.1
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 1.3e-20 104.0 133 45.9
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 2.2e-20 103.2 117 47.0
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 2.2e-20 103.2 121 45.5
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 2.2e-20 103.2 137 43.1
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 2.9e-20 102.8 137 41.6
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 2.9e-20 102.8 138 43.5
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 3.8e-20 102.4 134 45.5
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 3.8e-20 102.4 133 44.4
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 4.9e-20 102.1 151 42.4
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 4.9e-20 102.1 137 43.1
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 4.9e-20 102.1 137 41.6
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 6.4e-20 101.7 133 42.9
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 6.4e-20 101.7 119 50.4
Nitab4.5_0007261g0070 Nicotiana tabacum HOM05D006123 ORTHO05D007578 8.4e-20 101.3 133 40.6
Peaxi162Scf00760g00014 Petunia axillaris HOM05D006123 ORTHO05D007578 8.4e-20 101.3 133 42.9
Phvul.006G013100 Phaseolus vulgaris HOM05D006123 ORTHO05D007578 8.4e-20 101.3 134 41.8
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 8.4e-20 101.3 137 42.3
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 1.1e-19 100.9 137 42.3
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 1.1e-19 100.9 133 43.6
Sabra03G0115100 Salix brachista HOM05D006123 ORTHO05D007578 1.4e-19 100.5 121 46.3
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 1.9e-19 100.1 134 44.8
Thhalv10010449m.g Eutrema salsugineum HOM05D006123 ORTHO05D007578 2.5e-19 99.8 134 41.8
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 2.5e-19 99.8 137 40.9
PGSC0003DMG400013211 Solanum tuberosum HOM05D006123 ORTHO05D007578 3.2e-19 99.4 133 42.9
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 9.3e-19 97.8 135 39.3
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 1.2e-18 97.4 137 43.8
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 1.2e-18 97.4 137 43.8
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 1.2e-18 97.4 137 43.8
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 1.2e-18 97.4 134 40.3
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 1.2e-18 97.4 138 42.0
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 1.6e-18 97.1 137 43.1
PGSC0003DMG400032561 Solanum tuberosum HOM05D006123 ORTHO05D007578 2.1e-18 96.7 133 42.1
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 2.7e-18 96.3 130 43.1
Os09g0512700 Oryza sativa ssp. japonica HOM05D006123 ORTHO05D007578 3.5e-18 95.9 134 44.8
Solyc04g009320.3 Solanum lycopersicum HOM05D006123 ORTHO05D007578 4.6e-18 95.5 133 41.4
Sopen04g004440 Solanum pennellii HOM05D006123 ORTHO05D007578 4.6e-18 95.5 133 41.4
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 6.0e-18 95.1 133 45.1
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 2.3e-17 93.2 134 44.8
CAN.G624.16 Capsicum annuum HOM05D006123 ORTHO05D007578 5.1e-17 92.0 133 39.8
unitig_749.g13336 Utricularia gibba HOM05D006123 ORTHO05D007578 1.5e-16 90.5 147 40.8
SMO367G0194 Selaginella moellendorffii HOM05D006123 ORTHO05D007578 3.3e-16 89.4 133 40.6
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 3.3e-16 89.4 133 39.8
Lsat_1_v5_gn_6_11200 Lactuca sativa HOM05D001489 ORTHO05D007578 1.6e-15 87.0 116 41.4
Glyma.20G054400 Glycine max HOM05D006123 ORTHO05D007578 2.1e-15 86.7 110 44.5
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 4.8e-15 85.5 138 39.1
Lj2g0003712 Lotus japonicus HOM05D006123 ORTHO05D007578 2.6e-13 79.7 90 50.0
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 3.4e-13 79.3 170 31.2
Pp3c20_2600 Physcomitrium patens HOM05D006123 ORTHO05D007578 4.5e-13 79.0 144 36.1
CBR_g16829 Chara braunii HOM05D006123 ORTHO05D007578 7.1e-11 71.6 133 36.1
Mapoly0124s0025 Marchantia polymorpha HOM05D006123 ORTHO05D007578 1.2e-10 70.9 118 40.7
Potri.003G158701 Populus trichocarpa HOM05D006123 ORTHO05D007578 1.8e-09 67.0 72 47.2
Zm00001eb097710 Zea mays HOM05D006123 ORTHO05D007578 8.7e-09 64.7 101 40.6
AagrBONN_evm.TU.Sc2ySwM_344.168 Anthoceros agrestis HOM05D006123 ORTHO05D007578 1.1e-06 57.8 96 36.5


User provided reference genes

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