Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 0.0e+00 1449.9 702 100.0
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 7.2e-133 478.8 555 47.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.4e-131 474.6 563 46.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 2.4e-128 463.8 575 45.2
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 5.3e-128 462.6 546 47.3
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.0e-127 460.7 576 46.0
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.7e-127 458.8 556 46.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 7.7e-127 458.8 556 46.6
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.5e-125 454.5 564 45.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-125 454.5 556 46.0
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 4.2e-125 453.0 554 44.9
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.2e-124 451.4 552 44.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.6e-124 451.1 541 47.0
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.7e-124 450.3 552 45.8
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.0e-122 444.1 592 43.1
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.0e-122 444.1 592 43.1
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 1.7e-121 441.0 561 44.2
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 2.2e-121 440.7 552 45.5
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 2.4e-120 437.2 553 43.4
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.4e-120 437.2 563 45.5
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 3.1e-120 436.8 561 44.0
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 5.4e-120 436.0 577 43.3
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.6e-119 434.5 579 43.9
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 5.9e-119 432.6 599 42.9
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.3e-118 431.4 572 43.0
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.7e-118 431.0 596 42.4
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 6.5e-118 429.1 566 42.6
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.1e-117 428.3 524 44.3
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.5e-117 427.9 564 44.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.9e-117 427.6 507 45.4
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.9e-117 427.6 566 43.8
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.9e-117 427.6 572 43.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 2.5e-117 427.2 557 43.6
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 3.3e-117 426.8 564 43.8
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 9.5e-117 425.2 593 43.3
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.1e-116 424.1 565 44.1
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 6.1e-116 422.5 570 43.0
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.3e-115 420.6 572 42.7
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.0e-115 420.2 551 43.7
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 4.4e-114 416.4 556 43.2
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 5.7e-114 416.0 570 42.6
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 7.5e-114 415.6 555 42.2
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.3e-113 414.8 564 42.2
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.7e-113 414.5 556 42.3
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.7e-113 414.5 558 42.8
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 3.7e-113 413.3 537 42.8
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.9e-113 412.9 565 41.2
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.4e-112 410.6 536 42.0
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.2e-111 408.3 560 41.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 3.3e-109 400.2 574 42.2
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 4.3e-109 399.8 561 42.1
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 7.3e-109 399.1 586 40.8
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 7.3e-109 399.1 566 40.1
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 6.1e-108 396.0 563 42.1
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 2.3e-107 394.0 579 40.2
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 4.0e-107 393.3 555 41.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 6.8e-107 392.5 571 41.3
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 4.4e-106 389.8 514 42.8
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 5.8e-106 389.4 514 42.4
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.3e-105 388.3 521 41.8
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.7e-105 387.9 565 41.4
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.9e-105 387.1 581 41.3
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 3.7e-105 386.7 514 41.1
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 3.7e-105 386.7 509 42.8
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.9e-105 386.3 522 41.2
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 6.4e-105 386.0 510 42.4
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 6.4e-105 386.0 517 40.8
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 6.4e-105 386.0 596 40.3
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.4e-104 384.8 584 40.4
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.9e-104 384.4 560 41.1
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.4e-104 384.0 526 41.3
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 5.4e-104 382.9 560 39.6
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 5.4e-104 382.9 520 41.3
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 5.4e-104 382.9 555 39.8
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 9.2e-104 382.1 550 41.8
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.2e-103 381.7 564 40.2
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.0e-103 380.9 514 40.9
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 4.6e-103 379.8 562 39.5
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 6.0e-103 379.4 584 39.7
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 6.0e-103 379.4 564 40.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.0e-102 377.1 598 39.5
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.9e-102 376.7 501 42.7
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 6.6e-102 375.9 519 41.0
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 6.6e-102 375.9 558 39.1
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 8.6e-102 375.6 566 39.0
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.5e-101 374.8 511 41.3
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.5e-101 374.8 509 42.2
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.5e-101 374.8 511 41.3
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 9.5e-101 372.1 507 41.8
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.6e-100 371.3 514 41.8
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.1e-99 368.6 577 38.1
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 4.0e-99 366.7 557 39.5
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 6.4e-97 359.4 548 39.1
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.9e-96 357.8 559 39.4
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 3.2e-96 357.1 546 38.6
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.2e-96 357.1 597 37.2
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 7.0e-96 355.9 543 39.0
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.8e-95 352.4 543 40.1
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 8.6e-94 349.0 555 37.5
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 4.7e-92 343.2 582 37.8
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-91 341.7 498 41.0
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.3e-91 340.9 500 40.8
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 3.1e-91 340.5 574 38.0
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.7e-87 327.4 549 34.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 7.3e-85 319.3 553 38.3
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.6e-84 318.2 512 37.5
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 3.6e-84 317.0 566 35.9
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 2.4e-83 314.3 568 35.6
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.4e-83 314.3 514 37.9
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 3.1e-83 313.9 599 33.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.0e-82 311.2 581 36.8
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 2.0e-82 311.2 583 33.6
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 2.9e-81 307.4 517 38.5
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-79 300.8 498 38.4
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 6.0e-79 299.7 420 41.2
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 6.0e-79 299.7 552 33.7
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.3e-73 282.0 591 33.3
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 4.3e-69 266.9 504 34.3
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 5.6e-69 266.5 550 33.1
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.8e-68 263.5 534 32.8
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-66 257.7 534 33.1
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 3.5e-63 247.3 476 33.0
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.8e-62 245.0 514 32.7
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.7e-57 228.4 501 31.9
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-56 225.7 501 31.9
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-50 204.9 464 32.3
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-50 204.9 464 32.3
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.2e-48 197.2 406 34.2
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 4.6e-39 167.2 557 25.1
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.0e-38 166.0 456 28.7
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.8e-35 155.2 499 26.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 3.1e-35 154.5 292 37.0
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.9e-35 153.3 193 44.0
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.0e-34 151.8 94 69.1
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.3e-33 149.1 502 24.1
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.4e-32 145.6 491 27.1
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.5e-32 144.8 392 28.8
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.2e-32 144.1 159 47.8
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.4e-30 139.0 361 31.3
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 4.1e-27 127.5 455 23.3
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.1e-19 101.3 373 25.7
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 9.1e-19 99.8 436 22.2
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 5.5e-16 90.5 515 22.7
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.6e-15 89.0 124 41.9
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.5e-13 82.4 477 24.3
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 5.7e-13 80.5 159 34.0
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 7.5e-13 80.1 128 35.2
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-12 78.6 292 27.1
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.2e-10 72.8 85 38.8
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 2.7e-10 71.6 181 30.4
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 2.7e-10 71.6 181 30.4
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 7.7e-10 70.1 82 46.3
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-09 68.6 57 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 3.8e-09 67.8 123 30.9
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.9e-08 65.5 73 43.8
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 5.5e-08 63.9 159 30.2
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 8.0e-07 60.1 73 45.2


User provided reference genes

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