Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10236 Sapria himalayana HOM05D006530 ORTHO05D008283 7.0e-53 210.3 103 100.0
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 3.2e-13 78.6 72 58.3
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 3.2e-13 78.6 72 58.3
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 7.8e-12 73.9 72 55.6
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 1.3e-11 73.2 71 49.3
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 3.0e-11 72.0 72 55.6
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 3.0e-11 72.0 71 54.9
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 5.1e-11 71.2 71 47.9
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 5.1e-11 71.2 71 47.9
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 6.6e-11 70.9 72 51.4
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 6.6e-11 70.9 72 51.4
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 8.7e-11 70.5 72 48.6
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 1.1e-10 70.1 72 51.4
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 1.1e-10 70.1 71 50.7
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 1.5e-10 69.7 73 52.1
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 2.5e-10 68.9 72 51.4
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 2.5e-10 68.9 72 48.6
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 3.3e-10 68.6 68 52.9
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 4.3e-10 68.2 72 48.6
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 7.3e-10 67.4 72 51.4
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 7.3e-10 67.4 73 50.7
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 7.3e-10 67.4 73 50.7
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 9.6e-10 67.0 72 48.6
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 1.3e-09 66.6 71 49.3
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 1.3e-09 66.6 71 50.7
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 1.3e-09 66.6 72 44.4
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 1.3e-09 66.6 72 50.0
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 1.6e-09 66.2 72 50.0
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 1.6e-09 66.2 72 50.0
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 1.6e-09 66.2 71 49.3
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 1.6e-09 66.2 70 48.6
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 2.1e-09 65.9 72 48.6
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 4.8e-09 64.7 72 45.8
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 6.2e-09 64.3 72 45.8
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 6.2e-09 64.3 72 48.6
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 6.2e-09 64.3 71 50.7
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 6.2e-09 64.3 87 40.2
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 8.1e-09 63.9 72 47.2
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 8.1e-09 63.9 71 47.9
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 8.1e-09 63.9 71 49.3
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 1.1e-08 63.5 72 48.6
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.1e-08 63.5 71 47.9
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 1.4e-08 63.2 71 46.5
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 1.4e-08 63.2 72 43.1
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 1.4e-08 63.2 73 47.9
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 1.4e-08 63.2 72 48.6
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 1.8e-08 62.8 72 45.8
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 1.8e-08 62.8 72 45.8
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 2.4e-08 62.4 72 50.0
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 2.4e-08 62.4 73 46.6
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 4.0e-08 61.6 72 47.2
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 4.0e-08 61.6 72 47.2
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 4.0e-08 61.6 72 47.2
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 4.0e-08 61.6 71 42.3
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 4.0e-08 61.6 87 40.2
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 4.0e-08 61.6 72 45.8
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 4.0e-08 61.6 87 42.5
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 5.3e-08 61.2 71 49.3
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 6.9e-08 60.8 72 44.4
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 6.9e-08 60.8 72 43.1
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 9.0e-08 60.5 73 43.8
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 9.0e-08 60.5 73 43.8
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 9.0e-08 60.5 72 41.7
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 9.0e-08 60.5 72 45.8
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 1.2e-07 60.1 73 45.2
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 1.2e-07 60.1 70 47.1
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 1.5e-07 59.7 72 44.4
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 1.5e-07 59.7 72 44.4
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 1.5e-07 59.7 72 44.4
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 1.5e-07 59.7 72 43.1
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 2.0e-07 59.3 73 43.8
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 2.0e-07 59.3 72 45.8
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 4.5e-07 58.2 72 41.7
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 4.5e-07 58.2 72 41.7
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 4.5e-07 58.2 72 41.7
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 5.8e-07 57.8 72 44.4
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 5.8e-07 57.8 72 45.8
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 5.8e-07 57.8 72 45.8
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 5.8e-07 57.8 72 44.4
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 1.3e-06 56.6 72 45.8
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 1.3e-06 56.6 72 40.3
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 1.7e-06 56.2 70 44.3
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 1.7e-06 56.2 72 37.5
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 2.2e-06 55.8 72 40.3
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.9e-06 55.5 71 40.8
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 2.9e-06 55.5 72 41.7
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 4.9e-06 54.7 73 45.2
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 6.4e-06 54.3 72 43.1


User provided reference genes

Program Settings