Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10166 Sapria himalayana HOM05D004103 ORTHO05D049465 8.8e-30 132.9 64 100.0
Nn1g07514 Nelumbo nucifera HOM05D004103 ORTHO05D005242 2.3e-09 65.1 63 52.4
Actinidia07863 Actinidia chinensis HOM05D004103 ORTHO05D005242 3.0e-09 64.7 34 82.4
Ciclev10017468m.g Citrus clementina HOM05D004103 ORTHO05D005242 3.0e-09 64.7 34 82.4
vmacro12077 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 5.0e-09 63.9 34 82.4
Lj1A797G65 Lonicera japonica HOM05D004103 ORTHO05D005242 8.6e-09 63.2 34 79.4
Dinv21305 Davidia involucrata HOM05D004103 ORTHO05D005242 1.9e-08 62.0 34 79.4
Rhsim06G0177100 Rhododendron simsii HOM05D004103 ORTHO05D005242 1.9e-08 62.0 33 84.8
SEGI_32632 Sequoiadendron giganteum HOM05D004103 ORTHO05D005242 1.9e-08 62.0 34 73.5
ATR0691G219 Amborella trichopoda HOM05D004103 ORTHO05D005242 2.5e-08 61.6 34 76.5
MBI14_g08099_MAGBIO Magnolia biondii HOM05D004103 ORTHO05D005242 3.3e-08 61.2 34 79.4
Oeu053982.1 Olea europaea HOM05D004103 ORTHO05D049465 3.3e-08 61.2 34 82.4
Actinidia05004 Actinidia chinensis HOM05D004103 ORTHO05D005242 4.3e-08 60.8 34 76.5
Actinidia30403 Actinidia chinensis HOM05D004103 ORTHO05D005242 4.3e-08 60.8 34 76.5
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 4.3e-08 60.8 34 76.5
CSS0020645 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 4.3e-08 60.8 34 76.5
Hma1.2p1_1402F.1_g281120 Hydrangea macrophylla HOM05D004103 ORTHO05D005242 4.3e-08 60.8 34 76.5
Lsat_1_v5_gn_5_1860 Lactuca sativa HOM05D004103 ORTHO05D005242 4.3e-08 60.8 34 76.5
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 5.6e-08 60.5 34 73.5
vmacro11590 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 5.6e-08 60.5 34 76.5
Cc00_g16050 Coffea canephora HOM05D004103 ORTHO05D005242 9.5e-08 59.7 34 70.6
Lsat_1_v5_gn_9_103601 Lactuca sativa HOM05D004103 ORTHO05D005242 9.5e-08 59.7 34 76.5
QL04p068062 Quercus lobata HOM05D004103 ORTHO05D005242 9.5e-08 59.7 34 73.5
MSTRG.15796 Avicennia marina HOM05D004103 ORTHO05D005242 2.1e-07 58.5 61 49.2
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 2.1e-07 58.5 34 64.7
Dinv40861 Davidia involucrata HOM05D004103 ORTHO05D005242 2.8e-07 58.2 33 75.8
QL08p004112 Quercus lobata HOM05D004103 ORTHO05D005242 2.8e-07 58.2 34 70.6
HanXRQChr05g0160111 Helianthus annuus HOM05D004103 ORTHO05D005242 3.6e-07 57.8 34 73.5
Oeu005958.1 Olea europaea HOM05D004103 ORTHO05D005242 3.6e-07 57.8 34 70.6
TAR629G0286 Trochodendron aralioides HOM05D004103 ORTHO05D005242 3.6e-07 57.8 34 76.5
Prupe.4G243700 Prunus persica HOM05D004103 ORTHO05D005242 4.7e-07 57.4 34 70.6
Cpa.g.sc12.142 Carica papaya HOM05D004103 ORTHO05D005242 6.2e-07 57.0 34 70.6
Migut.M01651 Erythranthe guttata HOM05D004103 ORTHO05D005242 6.2e-07 57.0 34 73.5
Os04g0271000 Oryza sativa ssp. japonica HOM05D004103 ORTHO05D005242 6.2e-07 57.0 34 70.6
PGR083G2215 Punica granatum HOM05D004103 ORTHO05D005242 6.2e-07 57.0 34 70.6
PSO541G4137 Papaver somniferum HOM05D004103 ORTHO05D005242 8.1e-07 56.6 34 67.6
Rhsim06G0229800 Rhododendron simsii HOM05D004103 ORTHO05D005242 8.1e-07 56.6 34 73.5
RcHm_v2.0_Chr5g0053471 Rosa chinensis HOM05D004103 ORTHO05D005242 8.1e-07 56.6 34 73.5
SGA_v2.0_scaffold171G38864 Striga asiatica HOM05D004103 ORTHO05D005242 8.1e-07 56.6 34 73.5
CSS0037338 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 73.5
CAN.G623.3 Capsicum annuum HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 67.6
FvH4_3g29170 Fragaria vesca HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 73.5
FAN11G2140 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 73.5
Nitab4.5_0002736g0050 Nicotiana tabacum HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 70.6
Peaxi162Scf00139g01322 Petunia axillaris HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 70.6
unitig_747.g21638 Utricularia gibba HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 67.6
HPP92_018245 Vanilla planifolia HOM05D004103 ORTHO05D005242 1.1e-06 56.2 34 67.6
Cfa020190 Carpinus fangiana HOM05D004103 ORTHO05D005242 1.4e-06 55.8 34 67.6
CDE10G0035 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 1.4e-06 55.8 33 69.7
CDE10G0306 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 1.4e-06 55.8 33 69.7
MELO3C024942.2 Cucumis melo HOM05D004103 ORTHO05D005242 1.4e-06 55.8 34 67.6
Nitab4.5_0009777g0010 Nicotiana tabacum HOM05D004103 ORTHO05D005242 1.4e-06 55.8 34 67.6
SalBow8G0562 Salvia bowleyana HOM05D004103 ORTHO05D005242 1.4e-06 55.8 34 67.6
Solyc07g065550.3 Solanum lycopersicum HOM05D004103 ORTHO05D005242 1.4e-06 55.8 34 67.6
Sopen07g033750 Solanum pennellii HOM05D004103 ORTHO05D005242 1.4e-06 55.8 34 67.6
ClCG09G021370 Citrullus lanatus HOM05D004103 ORTHO05D005242 1.8e-06 55.5 34 67.6
CsaV3_7G011360 Cucumis sativus L. HOM05D004103 ORTHO05D005242 1.8e-06 55.5 34 67.6
HanXRQChr03g0075041 Helianthus annuus HOM05D004103 ORTHO05D005242 1.8e-06 55.5 34 67.6
Zm00001eb425070 Zea mays HOM05D004103 ORTHO05D005242 2.3e-06 55.1 34 67.6
Atru.chr2.3690 Acer truncatum HOM05D004103 ORTHO05D005242 3.1e-06 54.7 34 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1314 Anthoceros agrestis HOM05D004103 ORTHO05D005242 3.1e-06 54.7 34 67.6
AagrBONN_evm.TU.Sc2ySwM_228.1317 Anthoceros agrestis HOM05D004103 ORTHO05D005242 3.1e-06 54.7 34 67.6
CiPaw.12G138300 Carya illinoinensis HOM05D004103 ORTHO05D005242 3.1e-06 54.7 34 70.6
FAN21G3724 Fragaria x ananassa HOM05D004103 ORTHO05D005242 3.1e-06 54.7 34 70.6
FAN25G3398 Fragaria x ananassa HOM05D004103 ORTHO05D005242 3.1e-06 54.7 34 70.6
TWI38G1679 Tripterygium wilfordii HOM05D004103 ORTHO05D005242 3.1e-06 54.7 34 64.7
AUR62017106 Chenopodium quinoa HOM05D004103 ORTHO05D005242 4.0e-06 54.3 34 70.6
AUR62036459 Chenopodium quinoa HOM05D004103 ORTHO05D005242 4.0e-06 54.3 34 70.6
Eucgr.F02047 Eucalyptus grandis HOM05D004103 ORTHO05D005242 4.0e-06 54.3 34 67.6
MD11G1199100 Malus domestica HOM05D004103 ORTHO05D005242 4.0e-06 54.3 34 67.6
Hund06463 Selenicereus undatus HOM05D004103 ORTHO05D005242 4.0e-06 54.3 33 72.7
MD03G1179400 Malus domestica HOM05D004103 ORTHO05D005242 5.2e-06 53.9 34 67.6
EL10Ac4g07564 Beta vulgaris HOM05D004103 ORTHO05D005242 6.8e-06 53.5 34 70.6
Ciclev10008206m.g Citrus clementina HOM05D004103 ORTHO05D005242 6.8e-06 53.5 34 67.6
Potri.001G368100 Populus trichocarpa HOM05D004103 ORTHO05D005242 6.8e-06 53.5 34 67.6
Sabra16G0241200 Salix brachista HOM05D004103 ORTHO05D005242 6.8e-06 53.5 34 67.6
GSVIVG01014688001 Vitis vinifera HOM05D004103 ORTHO05D005242 6.8e-06 53.5 34 70.6
PSO675G6166 Papaver somniferum HOM05D004103 ORTHO05D005242 8.9e-06 53.1 34 64.7


User provided reference genes

Program Settings