Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10068 Sapria himalayana HOM05D004888 ORTHO05D005792 3.0e-173 611.7 299 100.0
Manes.15G072900 Manihot esculenta HOM05D004888 ORTHO05D005792 4.7e-17 92.8 96 50.0
Sabra16G0288800 Salix brachista HOM05D004888 ORTHO05D005792 6.2e-17 92.4 96 50.0
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 2.4e-16 90.5 96 49.0
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 5.2e-16 89.4 96 47.9
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 6.8e-16 89.0 96 46.9
Sabra11G0123700 Salix brachista HOM05D004888 ORTHO05D005792 6.8e-16 89.0 96 47.9
GSVIVG01037626001 Vitis vinifera HOM05D004888 ORTHO05D005792 1.5e-15 87.8 100 44.0
Eucgr.F03460 Eucalyptus grandis HOM05D004888 ORTHO05D005792 9.9e-15 85.1 96 42.7
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 1.3e-14 84.7 96 41.7
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 1.3e-14 84.7 96 41.7
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 2.2e-14 84.0 96 43.8
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 2.2e-14 84.0 96 43.8
Phvul.008G266100 Phaseolus vulgaris HOM05D004888 ORTHO05D005792 2.9e-14 83.6 100 46.0
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 3.8e-14 83.2 95 45.3
Ciclev10009934m.g Citrus clementina HOM05D004888 ORTHO05D005792 4.9e-14 82.8 95 45.3
Glyma.14G024900 Glycine max HOM05D004888 ORTHO05D005792 4.9e-14 82.8 100 43.0
Nn1g07117 Nelumbo nucifera HOM05D004888 ORTHO05D005792 4.9e-14 82.8 95 43.2
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 4.9e-14 82.8 96 42.7
Hund23258 Selenicereus undatus HOM05D004888 ORTHO05D005792 4.9e-14 82.8 96 44.8
Oeu007587.1 Olea europaea HOM05D004888 ORTHO05D005792 8.4e-14 82.0 95 45.3
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 1.1e-13 81.6 96 39.6
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 1.1e-13 81.6 95 45.3
TPR.G1165 Trifolium pratense HOM05D004888 ORTHO05D005792 1.1e-13 81.6 95 44.2
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 1.4e-13 81.3 95 46.3
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 1.4e-13 81.3 95 43.2
Ciclev10009938m.g Citrus clementina HOM05D004888 ORTHO05D005792 1.4e-13 81.3 100 44.0
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 1.4e-13 81.3 95 43.2
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 1.4e-13 81.3 95 43.2
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla HOM05D004888 ORTHO05D005792 1.9e-13 80.9 95 43.2
VMungo0647G2125 Vigna mungo HOM05D004888 ORTHO05D005792 1.9e-13 80.9 100 45.0
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 2.4e-13 80.5 95 41.1
Medtr5g092160 Medicago truncatula HOM05D004888 ORTHO05D005792 2.4e-13 80.5 95 44.2
Sp3g18510 Schrenkiella parvula HOM05D004888 ORTHO05D005792 2.4e-13 80.5 95 42.1
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 3.2e-13 80.1 96 42.7
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 3.2e-13 80.1 96 38.5
Psat2g013600 Pisum sativum HOM05D004888 ORTHO05D005792 3.2e-13 80.1 95 43.2
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 3.2e-13 80.1 95 44.2
Sc03g0008650 Simmondsia chinensis HOM05D004888 ORTHO05D005792 3.2e-13 80.1 95 42.1
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 3.2e-13 80.1 95 44.2
TWI38G0633 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 3.2e-13 80.1 95 41.1
TWI39G0566 Tripterygium wilfordii HOM05D004888 ORTHO05D005792 3.2e-13 80.1 95 42.1
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 4.2e-13 79.7 95 43.2
Hund02067 Selenicereus undatus HOM05D004888 ORTHO05D005792 5.4e-13 79.3 96 42.7
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 7.1e-13 79.0 95 41.1
Aqoxy1G03261 Aquilegia oxysepala HOM05D004888 ORTHO05D005792 1.2e-12 78.2 100 39.0
CARHR040840 Cardamine hirsuta HOM05D004888 ORTHO05D005792 1.2e-12 78.2 96 40.6
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 1.2e-12 78.2 95 40.0
Lalb_Chr04g0248511 Lupinus albus HOM05D004888 ORTHO05D005792 1.6e-12 77.8 100 39.0
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 1.6e-12 77.8 95 40.0
TAR627G0539 Trochodendron aralioides HOM05D004888 ORTHO05D005792 1.6e-12 77.8 95 41.1
EL10Ac4g07839 Beta vulgaris HOM05D004888 ORTHO05D005792 2.1e-12 77.4 96 41.7
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 2.7e-12 77.0 95 42.1
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 2.7e-12 77.0 95 42.1
Ca_06312_v3 Cicer arietinum L. HOM05D004888 ORTHO05D005792 2.7e-12 77.0 108 41.7
FAN11G0846 Fragaria x ananassa HOM05D000287 ORTHO05D002423 2.7e-12 77.0 144 33.3
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 2.7e-12 77.0 95 42.1
Duzib268G1286 Durio zibethinus HOM05D004888 ORTHO05D005792 3.5e-12 76.6 95 43.2
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 3.5e-12 76.6 95 42.1
CAN.G337.120 Capsicum annuum HOM05D004888 ORTHO05D005792 4.6e-12 76.3 94 40.4
Cc05_g13810 Coffea canephora HOM05D004888 ORTHO05D005792 6.0e-12 75.9 95 40.0
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 6.0e-12 75.9 95 41.1
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 6.0e-12 75.9 95 38.9
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 6.0e-12 75.9 95 40.0
Atru.chr2.3374 Acer truncatum HOM05D004888 ORTHO05D005792 7.8e-12 75.5 96 41.7
Thhalv10021782m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 7.8e-12 75.5 95 40.0
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 7.8e-12 75.5 108 38.0
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 7.8e-12 75.5 95 41.1
RcHm_v2.0_Chr5g0039111 Rosa chinensis HOM05D004888 ORTHO05D005792 7.8e-12 75.5 95 40.0
BolC5t33098H Brassica oleracea HOM05D004888 ORTHO05D005792 1.0e-11 75.1 127 37.8
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.0e-11 75.1 95 41.1
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 1.0e-11 75.1 95 41.1
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 1.3e-11 74.7 95 41.1
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 1.3e-11 74.7 96 38.5
MD11G1221000 Malus domestica HOM05D004888 ORTHO05D005792 1.3e-11 74.7 95 40.0
Os03g0568500 Oryza sativa ssp. japonica HOM05D004888 ORTHO05D005792 1.3e-11 74.7 95 36.8
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 1.7e-11 74.3 95 40.0
AT1G50740 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 1.7e-11 74.3 96 39.6
Ah.04g165810 Amaranthus hybridus HOM05D004888 ORTHO05D005792 2.3e-11 73.9 96 38.5
HanXRQChr11g0336191 Helianthus annuus HOM05D004888 ORTHO05D005792 2.3e-11 73.9 95 40.0
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 2.3e-11 73.9 96 42.7
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 3.0e-11 73.6 96 38.5
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 3.0e-11 73.6 141 34.8
Gohir.A04G018500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 3.0e-11 73.6 95 42.1
PSO541G5647 Papaver somniferum HOM05D004888 ORTHO05D005792 3.0e-11 73.6 95 38.9
PSO675G7988 Papaver somniferum HOM05D004888 ORTHO05D005792 3.0e-11 73.6 95 38.9
Aa31LG10G3270 Aethionema arabicum HOM05D004888 ORTHO05D005792 3.9e-11 73.2 96 39.6
FvH4_3g22450 Fragaria vesca HOM05D004888 ORTHO05D005792 5.1e-11 72.8 95 37.9
LjContig00272g0005832 Lotus japonicus HOM05D004888 ORTHO05D005792 5.1e-11 72.8 95 40.0
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 6.6e-11 72.4 95 38.9
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 6.6e-11 72.4 95 38.9
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 6.6e-11 72.4 95 38.9
Gohir.D05G367500 Gossypium hirsutum HOM05D004888 ORTHO05D005792 6.6e-11 72.4 95 41.1
Gorai.009G435100 Gossypium raimondii HOM05D004888 ORTHO05D005792 6.6e-11 72.4 95 41.1
Zm00001eb048800 Zea mays HOM05D004888 ORTHO05D005792 6.6e-11 72.4 95 34.7
AUR62015745 Chenopodium quinoa HOM05D004888 ORTHO05D005792 8.7e-11 72.0 91 40.7
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea HOM05D004888 ORTHO05D005792 1.1e-10 71.6 95 37.9
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea HOM05D004888 ORTHO05D005792 1.1e-10 71.6 95 37.9
FAN21G0776 Fragaria x ananassa HOM05D004888 ORTHO05D005792 1.1e-10 71.6 95 38.9
CARHR096270 Cardamine hirsuta HOM05D004888 ORTHO05D005792 1.5e-10 71.2 95 38.9
FAN25G0554 Fragaria x ananassa HOM05D000287 ORTHO05D002423 1.5e-10 71.2 95 37.9
BcaB04g19111 Brassica carinata HOM05D004888 ORTHO05D005792 1.9e-10 70.9 95 37.9
ECA236G1052 Erigeron canadensis HOM05D004888 ORTHO05D005792 2.5e-10 70.5 95 40.0
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 2.5e-10 70.5 95 38.9
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 3.3e-10 70.1 95 37.9
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 4.3e-10 69.7 97 38.1
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 4.3e-10 69.7 97 38.1
AUR62020467 Chenopodium quinoa HOM05D004888 ORTHO05D005792 4.3e-10 69.7 91 39.6
Dinv40745 Davidia involucrata HOM05D004888 ORTHO05D005792 5.6e-10 69.3 67 47.8
Oeu020120.2 Olea europaea HOM05D004888 ORTHO05D005792 5.6e-10 69.3 112 38.4
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 7.3e-10 68.9 97 37.1
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 9.6e-10 68.6 102 36.3
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 9.6e-10 68.6 97 37.1
Haze_09660 Corylus avellana HOM05D004888 ORTHO05D005792 9.6e-10 68.6 117 34.2
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 9.6e-10 68.6 95 37.9
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 1.3e-09 68.2 97 37.1
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 2.1e-09 67.4 94 38.3
Cpa.g.sc97.18 Carica papaya HOM05D004888 ORTHO05D005792 8.1e-09 65.5 67 44.8
COL.COLO4_09650 Corchorus olitorius HOM05D004888 ORTHO05D005792 1.1e-08 65.1 105 34.3
SHI31853 Sapria himalayana HOM05D004888 ORTHO05D005792 5.3e-08 62.8 135 35.6
A05p28330 Brassica napus HOM05D001160 ORTHO05D001092 1.2e-07 61.6 67 41.8
C05p43820 Brassica napus HOM05D001160 ORTHO05D001092 2.0e-07 60.8 67 41.8
ClCG05G014360 Citrullus lanatus HOM05D004888 ORTHO05D005792 2.6e-07 60.5 91 34.1
BcaNung06349 Brassica carinata HOM05D004888 ORTHO05D005792 3.4e-07 60.1 67 40.3
BraA05t21716Z Brassica rapa HOM05D001160 ORTHO05D001092 4.4e-07 59.7 67 41.8
SHI48322 Sapria himalayana HOM05D000035 ORTHO05D000031 4.4e-07 59.7 50 66.0
Duzib170G0778 Durio zibethinus HOM05D004888 ORTHO05D005792 5.8e-07 59.3 67 40.3
Duzib170G1055 Durio zibethinus HOM05D004888 ORTHO05D005792 5.8e-07 59.3 67 40.3
SHI17777 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-07 59.3 55 63.6
Actinidia36945 Actinidia chinensis HOM05D004888 ORTHO05D005792 1.7e-06 57.8 60 45.0
MBI18_g28089_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.9e-06 57.0 68 38.2
SHI35840 Sapria himalayana HOM05D005377 ORTHO05D003034 2.9e-06 57.0 40 65.0
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 6.4e-06 55.8 96 35.4
SHI22043 Sapria himalayana HOM05D005377 ORTHO05D370430 8.4e-06 55.5 70 50.0


User provided reference genes

Program Settings