Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 3.5e-158 561.6 287 100.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 6.9e-58 228.4 268 49.3
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.4e-57 226.1 268 49.3
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 5.5e-55 218.8 265 48.3
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.4e-53 214.2 268 46.6
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.5e-52 210.7 277 47.3
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.7e-51 207.2 268 47.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.7e-51 206.1 270 46.7
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.1e-50 204.5 268 46.6
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.1e-50 203.0 268 47.0
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 4.1e-50 202.6 269 48.3
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.1e-50 202.6 270 47.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 7.0e-50 201.8 268 45.9
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 9.1e-50 201.4 270 45.2
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 2.6e-49 199.9 271 46.1
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.3e-48 197.6 274 45.6
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 2.2e-48 196.8 277 44.0
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 2.9e-48 196.4 274 43.8
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 3.8e-48 196.1 269 43.1
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 5.0e-48 195.7 269 45.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.4e-47 194.1 250 45.2
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.9e-47 193.7 272 46.7
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 2.5e-47 193.4 278 44.6
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 4.2e-47 192.6 267 43.8
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.5e-47 192.2 273 45.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 9.4e-47 191.4 230 49.1
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.7e-46 189.9 269 43.1
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 3.6e-46 189.5 265 41.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.0e-45 188.0 274 43.4
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.0e-45 188.0 271 43.5
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.4e-45 187.6 266 44.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.3e-45 186.8 250 44.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.5e-44 184.1 277 41.9
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-44 184.1 269 41.6
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.6e-44 183.3 272 43.0
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.3e-44 183.0 265 41.9
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.3e-44 183.0 268 41.0
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.4e-44 182.6 276 42.4
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 5.7e-44 182.2 275 45.1
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 9.7e-44 181.4 272 43.4
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-43 181.0 268 40.7
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.3e-43 181.0 271 40.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.7e-43 180.6 290 42.1
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.8e-43 179.9 273 42.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 3.7e-43 179.5 285 39.3
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 3.7e-43 179.5 258 42.2
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 6.3e-43 178.7 258 45.0
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.3e-43 178.7 268 42.9
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.3e-43 178.7 268 40.3
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.4e-42 177.6 283 43.1
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.4e-42 177.6 268 39.9
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.8e-42 177.2 272 42.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.4e-42 176.8 283 42.8
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 4.1e-42 176.0 268 39.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 5.3e-42 175.6 257 43.2
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.3e-42 175.6 266 41.4
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 7.0e-42 175.3 272 40.1
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 9.1e-42 174.9 269 42.4
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 9.1e-42 174.9 266 44.4
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.1e-42 174.9 253 42.7
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.2e-41 174.5 269 40.5
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.7e-41 171.8 260 40.0
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.0e-40 171.4 281 39.9
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.3e-40 171.0 295 40.3
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.7e-40 170.6 292 39.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.2e-40 170.2 258 42.2
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.2e-40 170.2 266 41.7
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.9e-40 169.9 228 43.4
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 3.8e-40 169.5 223 43.9
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 5.0e-40 169.1 266 41.7
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 6.5e-40 168.7 263 43.3
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 8.5e-40 168.3 268 41.4
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.5e-39 167.5 270 39.3
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.5e-39 167.5 260 39.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.5e-39 167.5 274 43.1
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.9e-39 167.2 259 42.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.9e-39 167.2 260 41.5
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 4.2e-39 166.0 279 39.8
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 5.5e-39 165.6 275 40.0
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.4e-39 164.9 299 38.5
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.2e-38 164.5 273 39.9
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-38 164.1 262 42.4
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.1e-38 163.7 276 38.8
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 8.0e-38 161.8 266 42.1
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.0e-38 161.8 282 40.1
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.0e-37 161.4 281 39.1
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.4e-37 161.0 275 39.6
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.8e-37 160.6 270 41.1
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.3e-37 160.2 258 41.1
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.3e-37 160.2 268 39.6
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.0e-37 159.8 266 40.6
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.0e-37 159.8 283 39.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 4.0e-37 159.5 259 40.5
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 5.2e-37 159.1 201 46.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 8.8e-37 158.3 272 40.1
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 8.8e-37 158.3 273 39.6
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.2e-36 157.9 270 40.0
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.5e-36 157.5 266 40.2
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.5e-36 157.5 284 39.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 2.0e-36 157.1 284 39.1
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.6e-36 156.8 272 39.3
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 7.5e-36 155.2 257 39.3
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.7e-35 152.9 281 38.4
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 4.8e-35 152.5 257 39.7
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.1e-34 149.8 295 37.6
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 9.1e-34 148.3 259 39.4
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 5.9e-33 145.6 281 36.3
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-32 144.4 275 38.2
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.2e-32 143.7 266 39.5
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.9e-32 143.3 270 35.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 6.5e-32 142.1 205 42.0
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.5e-31 140.2 270 37.0
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.2e-30 137.9 277 39.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.1e-30 137.1 258 37.2
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 4.7e-30 136.0 267 38.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.3e-29 133.7 255 38.0
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 6.8e-29 132.1 274 35.4
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-28 131.3 316 33.2
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 3.4e-28 129.8 356 32.0
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.7e-28 129.0 316 32.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.2e-27 127.1 281 35.9
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.7e-27 126.3 209 37.3
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 4.8e-27 125.9 261 36.8
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.8e-27 125.9 273 34.4
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.8e-26 124.0 213 38.0
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 5.4e-26 122.5 190 42.1
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-25 120.9 238 36.1
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 3.5e-25 119.8 229 35.8
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.3e-24 117.1 281 35.2
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.3e-24 117.1 225 37.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 3.8e-24 116.3 179 40.2
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 3.8e-24 116.3 259 35.9
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 8.0e-22 108.6 232 35.8
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 5.2e-21 105.9 193 37.3
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.2e-21 105.9 268 31.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 8.9e-21 105.1 270 30.7
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 6.3e-19 99.0 215 33.5
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.1e-15 88.2 169 34.9
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.8e-14 83.6 223 33.2
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 5.2e-13 79.3 113 46.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 4.1e-10 69.7 116 44.8
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.7e-08 64.3 222 27.9
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.5e-07 61.2 268 26.1
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 6.2e-06 55.8 161 29.8


User provided reference genes

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