Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 7.3e-211 736.9 349 100.0
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 2.6e-131 472.6 343 66.2
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 7.5e-131 471.1 335 68.1
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 2.2e-130 469.5 343 66.2
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 4.8e-130 468.4 343 65.6
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 6.3e-130 468.0 343 65.6
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 3.1e-129 465.7 342 65.2
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.1e-129 465.7 343 65.0
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 3.1e-129 465.7 335 64.8
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 4.1e-129 465.3 342 66.1
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 4.1e-129 465.3 342 66.4
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 7.0e-129 464.5 343 64.4
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 7.0e-129 464.5 353 64.3
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 7.0e-129 464.5 343 65.3
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 9.1e-129 464.2 343 64.4
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.2e-128 463.8 343 65.0
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 1.2e-128 463.8 344 64.5
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 1.6e-128 463.4 330 67.0
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 2.0e-128 463.0 343 64.4
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 4.5e-128 461.8 343 64.7
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 7.7e-128 461.1 342 65.5
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 1.0e-127 460.7 357 63.6
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.7e-127 459.9 342 64.9
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 2.2e-127 459.5 345 63.8
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 2.9e-127 459.1 343 63.6
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 3.8e-127 458.8 343 65.0
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 5.0e-127 458.4 335 65.7
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 6.5e-127 458.0 343 63.0
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 6.5e-127 458.0 342 63.5
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 1.5e-126 456.8 342 63.7
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.9e-126 456.4 343 63.8
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 2.5e-126 456.1 343 64.4
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 2.5e-126 456.1 343 64.4
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.2e-126 455.7 344 63.4
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 4.2e-126 455.3 342 63.2
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.2e-126 455.3 335 64.2
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 7.2e-126 454.5 342 64.3
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 7.2e-126 454.5 343 64.1
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 7.2e-126 454.5 343 63.8
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 9.5e-126 454.1 343 63.8
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 9.5e-126 454.1 335 64.8
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 1.6e-125 453.4 348 63.2
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 1.6e-125 453.4 342 63.7
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.1e-125 453.0 335 64.8
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 2.1e-125 453.0 343 61.8
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 2.8e-125 452.6 342 64.0
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 3.6e-125 452.2 356 64.3
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 4.7e-125 451.8 335 64.8
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.7e-125 451.8 335 64.8
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 6.1e-125 451.4 342 63.5
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 6.1e-125 451.4 335 64.5
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 6.1e-125 451.4 343 63.6
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 6.1e-125 451.4 335 64.5
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.0e-124 450.7 342 62.3
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.8e-124 449.9 343 63.0
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 5.2e-124 448.4 342 63.2
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 6.8e-124 448.0 343 63.3
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 8.8e-124 447.6 342 62.0
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 8.8e-124 447.6 361 60.9
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.2e-123 447.2 335 63.9
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 1.5e-123 446.8 342 63.2
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 2.0e-123 446.4 352 60.8
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 2.0e-123 446.4 343 62.7
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 2.6e-123 446.0 359 61.0
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 4.4e-123 445.3 342 60.8
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 9.8e-123 444.1 343 61.8
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.3e-122 443.7 337 64.1
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.7e-122 443.4 335 63.9
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 1.7e-122 443.4 342 62.6
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.1e-121 440.7 335 63.0
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.1e-121 440.7 335 62.1
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 1.1e-121 440.7 335 62.1
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 1.1e-121 440.7 335 62.1
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.1e-121 440.7 353 62.0
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 1.8e-121 439.9 343 61.2
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 2.4e-121 439.5 326 65.3
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 2.4e-121 439.5 335 61.5
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 3.1e-121 439.1 355 60.6
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 5.4e-121 438.3 356 59.8
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 5.4e-121 438.3 342 61.7
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 5.4e-121 438.3 343 61.8
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 7.0e-121 438.0 372 59.1
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 7.0e-121 438.0 353 60.1
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 9.2e-121 437.6 347 62.2
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.2e-120 437.2 335 63.9
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 1.2e-120 437.2 368 58.2
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.6e-120 436.8 355 60.3
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 2.7e-120 436.0 340 61.8
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 2.7e-120 436.0 340 61.8
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 5.9e-120 434.9 353 59.5
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 5.9e-120 434.9 340 61.5
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 5.9e-120 434.9 340 61.5
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 5.9e-120 434.9 351 60.1
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 5.9e-120 434.9 340 61.5
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 7.8e-120 434.5 340 61.2
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 7.8e-120 434.5 349 59.0
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.0e-119 434.1 353 59.8
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 1.3e-119 433.7 340 61.2
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.7e-119 433.3 353 59.8
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.8e-119 432.2 343 61.5
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 5.0e-119 431.8 351 60.1
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 5.0e-119 431.8 353 59.5
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 5.0e-119 431.8 340 61.8
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 6.6e-119 431.4 354 59.6
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 6.6e-119 431.4 342 60.2
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 8.6e-119 431.0 335 60.9
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 1.5e-118 430.3 353 59.2
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 1.5e-118 430.3 353 59.2
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.5e-118 430.3 353 58.9
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 5.6e-118 428.3 340 60.6
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 7.3e-118 427.9 335 63.3
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.2e-117 427.2 340 60.3
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 2.8e-117 426.0 342 59.1
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 2.3e-116 422.9 386 55.7
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.2e-116 421.8 320 63.8
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 2.6e-115 419.5 342 59.6
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 4.1e-113 412.1 342 57.3
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.2e-112 410.6 348 57.8
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.7e-111 406.8 335 59.4
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 3.4e-107 392.5 300 64.0
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 3.5e-104 382.5 336 55.1
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 1.3e-103 380.6 350 52.9
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 6.2e-101 371.7 350 54.0
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 4.0e-100 369.0 342 55.3
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 2.4e-97 359.8 342 51.5
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 6.0e-96 355.1 353 48.7
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 8.6e-95 351.3 334 51.5
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 1.5e-94 350.5 246 67.1
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.1e-92 344.4 321 55.1
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 2.3e-92 343.2 280 59.3
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 7.1e-89 331.6 335 47.8
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 5.1e-87 325.5 292 56.2
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 1.5e-75 287.3 244 59.4
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.2e-72 277.7 340 42.9
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 7.9e-72 275.0 275 48.4
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 4.8e-69 265.8 344 40.1
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 4.0e-60 236.1 246 50.8
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.0e-55 221.5 238 50.0
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 2.0e-51 207.2 149 69.8
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.6e-48 196.4 123 68.3
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 6.7e-39 165.6 172 43.0
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 4.8e-37 159.5 172 42.4
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 1.2e-32 144.8 159 50.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.6e-27 127.1 284 31.3
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 3.5e-27 126.7 78 71.8
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.2e-25 119.8 130 53.8
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 6.7e-23 112.5 87 65.5
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 2.6e-22 110.5 74 58.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-20 105.1 126 42.9
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 2.2e-13 80.9 102 37.3


User provided reference genes

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