Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09638 Sapria himalayana HOM05D003397 ORTHO05D048388 1.3e-63 246.1 113 100.0
SMO336G0042 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 3.0e-12 75.5 33 100.0
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 8.6e-12 73.9 35 94.3
Actinidia33153 Actinidia chinensis HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
ATR0564G238 Amborella trichopoda HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
AagrBONN_evm.TU.Sc2ySwM_228.4168 Anthoceros agrestis HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
arahy.Tifrunner.gnm1.ann1.L14VXE Arachis hypogaea HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
arahy.Tifrunner.gnm1.ann1.ZST20A Arachis hypogaea HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
MSTRG.944 Avicennia marina HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Cfa015924 Carpinus fangiana HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
CiPaw.06G022200 Carya illinoinensis HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Ciclev10000007m.g Citrus clementina HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Cc10_g05850 Coffea canephora HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Haze_00572 Corylus avellana HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
MELO3C022793.2 Cucumis melo HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
CsaV3_5G023610 Cucumis sativus L. HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Duzib116G0371 Durio zibethinus HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Migut.C00221 Erythranthe guttata HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Glyma.06G105900 Glycine max HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Gohir.A01G186450 Gossypium hirsutum HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Gohir.D01G183100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Gorai.002G219400 Gossypium raimondii HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
HanXRQChr05g0147241 Helianthus annuus HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Hma1.2p1_0120F.1_g057070 Hydrangea macrophylla HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
MBI02_g30884_MAGBIO Magnolia biondii HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Manes.02G155300 Manihot esculenta HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Manes.18G070300 Manihot esculenta HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Nn5g29020 Nelumbo nucifera HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Nitab4.5_0000469g0180 Nicotiana tabacum HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Nitab4.5_0005253g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Nitab4.5_0006548g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Oeu024555.1 Olea europaea HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Peaxi162Scf00160g01527 Petunia axillaris HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
QL12p035954 Quercus lobata HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Sed0010592 Sechium edule HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Solyc12g056940.2 Solanum lycopersicum HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Sopen12g029600 Solanum pennellii HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
PGSC0003DMG400008551 Solanum tuberosum HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
SGA_v2.0_scaffold201G41423 Striga asiatica HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
THA.LOC104813126 Tarenaya hassleriana HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Thecc.08G111500 Theobroma cacao HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
TWI56G0794 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
unitig_46.g18003 Utricularia gibba HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
vmacro04766 Vaccinium macrocarpon HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
VMungo1309G3072 Vigna mungo HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Zm00001eb086560 Zea mays HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Zm00001eb419400 Zea mays HOM05D003397 ORTHO05D004390 4.3e-11 71.6 33 97.0
Eucgr.F00484 Eucalyptus grandis HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Glyma.04G104900 Glycine max HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Gohir.D05G269700 Gossypium hirsutum HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Lalb_Chr08g0241871 Lupinus albus HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Lalb_Chr11g0065541 Lupinus albus HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Nn1g05275 Nelumbo nucifera HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Phvul.009G028700 Phaseolus vulgaris HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Potri.005G169100 Populus trichocarpa HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Sc04g0006510 Simmondsia chinensis HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Sc20g0003310 Simmondsia chinensis HOM05D003397 ORTHO05D004390 5.6e-11 71.2 33 93.9
Cpa.g.sc66.90 Carica papaya HOM05D003397 ORTHO05D004390 7.3e-11 70.9 35 88.6
Ca_15227_v3 Cicer arietinum L. HOM05D003397 ORTHO05D004390 7.3e-11 70.9 33 93.9
Medtr3g073820 Medicago truncatula HOM05D003397 ORTHO05D004390 7.3e-11 70.9 33 93.9
Psat5g137080 Pisum sativum HOM05D003397 ORTHO05D004390 7.3e-11 70.9 33 93.9
TPR.G34613 Trifolium pratense HOM05D003397 ORTHO05D004390 7.3e-11 70.9 33 93.9
Ah.05g168580 Amaranthus hybridus HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BcaB04g17823 Brassica carinata HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BcaB07g33794 Brassica carinata HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BcaC07g37499 Brassica carinata HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BcaC08g43005 Brassica carinata HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
A06p04730 Brassica napus HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
A08p07970 Brassica napus HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
C06p02460 Brassica napus HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BolC6t35373H Brassica oleracea HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BolC8t47818H Brassica oleracea HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BraA06t23676Z Brassica rapa HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
BraA08t32819Z Brassica rapa HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
CARHR034860 Cardamine hirsuta HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
CARHR034880 Cardamine hirsuta HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
CDE05G2113 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
Lj1g0005089 Lotus japonicus HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
MD15G1363500 Malus domestica HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
Peaxi162Scf00030g01821 Petunia axillaris HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
Rhsim07G0200500 Rhododendron simsii HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
Sp1g30640 Schrenkiella parvula HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
TAR381G1558 Trochodendron aralioides HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
HPP92_027255 Vanilla planifolia HOM05D003397 ORTHO05D004390 9.5e-11 70.5 33 93.9
Actinidia29577 Actinidia chinensis HOM05D003397 ORTHO05D004390 1.2e-10 70.1 33 93.9
AT1G36180 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 1.2e-10 70.1 33 93.9
CSS0006750 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 1.2e-10 70.1 31 100.0
Pp3c13_14480 Physcomitrium patens HOM05D003397 ORTHO05D004390 1.2e-10 70.1 33 93.9
Pp3c4_17500 Physcomitrium patens HOM05D003397 ORTHO05D004390 1.2e-10 70.1 33 93.9
Atru.chr13.1263 Acer truncatum HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Aqoxy5G01966 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
CSS0020243 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
CSS0020930 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
CANSAT11G0938 Cannabis sativa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
CANSAT25G3899 Cannabis sativa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
CiPaw.05G233000 Carya illinoinensis HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
AUR62022354 Chenopodium quinoa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
AUR62034355 Chenopodium quinoa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Dinv44744 Davidia involucrata HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
ECA232G1190 Erigeron canadensis HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
ECA236G4037 Erigeron canadensis HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
FvH4_5g38000 Fragaria vesca HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
FAN08G3668 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
FAN13G2833 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
FAN18G1561 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Gorai.009G282300 Gossypium raimondii HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 90.9
HanXRQChr11g0320961 Helianthus annuus HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Lsat_1_v5_gn_9_44420 Lactuca sativa HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Lj4C108T3 Lonicera japonica HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Peaxi162Scf00310g00211 Petunia axillaris HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Prupe.1G512000 Prunus persica HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
RcHm_v2.0_Chr7g0239931 Rosa chinensis HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
GSVIVG01008991001 Vitis vinifera HOM05D003397 ORTHO05D004390 1.6e-10 69.7 33 93.9
Carub.0001s3361 Capsella rubella HOM05D003397 ORTHO05D004390 2.1e-10 69.3 33 90.9
Potri.002G092700 Populus trichocarpa HOM05D003397 ORTHO05D004390 2.1e-10 69.3 33 90.9
PGR042G1140 Punica granatum HOM05D003397 ORTHO05D004390 2.1e-10 69.3 33 93.9
SEGI_22371 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 2.1e-10 69.3 33 90.9
CDE05G1314 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 2.8e-10 68.9 33 90.9
Medtr3g073860 Medicago truncatula HOM05D003397 ORTHO05D004390 2.8e-10 68.9 33 90.9
PSO210G7545 Papaver somniferum HOM05D003397 ORTHO05D004390 2.8e-10 68.9 33 90.9
PSO447G0125 Papaver somniferum HOM05D003397 ORTHO05D004390 2.8e-10 68.9 33 90.9
Sabra02G0073200 Salix brachista HOM05D003397 ORTHO05D004390 3.6e-10 68.6 33 87.9
TAR625G1432 Trochodendron aralioides HOM05D003397 ORTHO05D004390 3.6e-10 68.6 33 90.9
Aa31LG6G8980 Aethionema arabicum HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 90.9
AL1G50880 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 93.9
CBR_g21136 Chara braunii HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 90.9
MD08G1178000 Malus domestica HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 90.9
Nitab4.5_0000421g0140 Nicotiana tabacum HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 93.9
Os10g0363300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 90.9
TWI12G0718 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 93.9
Zm00001eb223980 Zea mays HOM05D003397 ORTHO05D004390 4.7e-10 68.2 33 90.9
AT1G36160 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 1.1e-09 67.0 33 87.9
Mapoly0002s0049 Marchantia polymorpha HOM05D003397 ORTHO05D004390 1.4e-09 66.6 33 90.9
AL1G50870 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 2.3e-09 65.9 33 87.9
PRCOL_00001984 Prasinoderma coloniale HOM05D003397 ORTHO05D004390 2.3e-09 65.9 32 84.4
FAN08G1690 Fragaria x ananassa HOM05D003397 ORTHO05D004390 7.5e-08 60.8 33 78.8
Lsat_1_v5_gn_5_38561 Lactuca sativa HOM05D003397 ORTHO05D048388 7.5e-08 60.8 53 60.4
SHI09383 Sapria himalayana HOM05D003397 ORTHO05D004390 4.9e-07 58.2 27 92.6
Haze_26794 Corylus avellana HOM05D003397 ORTHO05D004390 1.4e-06 56.6 31 77.4
MCO16G004 Micromonas commoda HOM05D002240 ORTHO05D002453 4.1e-06 55.1 31 74.2
Cre06.g258700 Chlamydomonas reinhardtii HOM05D002240 ORTHO05D002453 7.1e-06 54.3 31 67.7


User provided reference genes

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