Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 4.3e-92 341.3 167 100.0
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 1.1e-28 130.6 68 95.6
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 7.2e-23 111.3 70 78.6
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 1.2e-22 110.5 70 77.1
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.2e-22 110.5 70 74.3
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 2.1e-22 109.8 70 77.1
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 2.7e-22 109.4 70 78.6
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 6.1e-22 108.2 70 72.9
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 6.1e-22 108.2 70 74.3
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 8.0e-22 107.8 70 75.7
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 8.0e-22 107.8 70 71.4
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 8.0e-22 107.8 70 74.3
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 1.8e-21 106.7 70 72.9
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.8e-21 106.7 73 72.6
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.8e-21 106.7 70 74.3
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 2.3e-21 106.3 70 75.7
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 2.3e-21 106.3 70 71.4
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.3e-21 106.3 67 80.6
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 2.3e-21 106.3 70 72.9
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 2.3e-21 106.3 70 74.3
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 2.3e-21 106.3 70 72.9
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 72.9
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 3.0e-21 105.9 79 69.6
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 72.9
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 74.3
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 72.9
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 74.3
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 74.3
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 74.3
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 3.0e-21 105.9 70 74.3
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 3.9e-21 105.5 70 74.3
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 3.9e-21 105.5 70 72.9
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 3.9e-21 105.5 70 71.4
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 3.9e-21 105.5 70 72.9
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 3.9e-21 105.5 70 72.9
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 5.2e-21 105.1 70 74.3
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 5.2e-21 105.1 70 71.4
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 5.2e-21 105.1 70 74.3
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 70.0
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 70.0
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 70.0
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 70.0
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 72.9
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 74.3
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 72.9
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 6.7e-21 104.8 73 68.5
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 6.7e-21 104.8 70 72.9
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 8.8e-21 104.4 70 71.4
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 8.8e-21 104.4 70 71.4
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 8.8e-21 104.4 70 72.9
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 8.8e-21 104.4 70 67.1
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 8.8e-21 104.4 70 72.9
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 8.8e-21 104.4 70 72.9
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 8.8e-21 104.4 70 72.9
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.1e-20 104.0 70 75.7
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 1.1e-20 104.0 70 70.0
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 1.1e-20 104.0 70 71.4
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.1e-20 104.0 70 75.7
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.1e-20 104.0 70 75.7
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.1e-20 104.0 70 72.9
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.1e-20 104.0 70 71.4
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 1.5e-20 103.6 70 75.7
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 1.5e-20 103.6 71 66.2
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 1.5e-20 103.6 70 72.9
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 1.5e-20 103.6 70 70.0
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.5e-20 103.6 70 70.0
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.5e-20 103.6 70 70.0
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.5e-20 103.6 70 74.3
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 2.0e-20 103.2 70 70.0
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 2.0e-20 103.2 70 71.4
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 2.0e-20 103.2 70 70.0
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 2.0e-20 103.2 70 72.9
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 2.0e-20 103.2 70 70.0
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.0e-20 103.2 70 71.4
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 74.3
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 70.0
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 70.0
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 72.9
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 71.4
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 70.0
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 70.0
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 72.9
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.6e-20 102.8 70 74.3
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 3.3e-20 102.4 70 72.9
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 3.3e-20 102.4 70 71.4
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 3.3e-20 102.4 70 68.6
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 4.4e-20 102.1 70 72.9
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 4.4e-20 102.1 70 71.4
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 4.4e-20 102.1 70 70.0
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 4.4e-20 102.1 70 68.6
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 68.6
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 68.6
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 68.6
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 70.0
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 71.4
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 67.1
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 70.0
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 70.0
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 5.7e-20 101.7 70 70.0
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 7.4e-20 101.3 70 68.6
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 7.4e-20 101.3 70 70.0
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 7.4e-20 101.3 98 54.1
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 9.7e-20 100.9 70 71.4
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 9.7e-20 100.9 70 70.0
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.3e-19 100.5 68 72.1
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.3e-19 100.5 70 71.4
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.3e-19 100.5 70 68.6
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.2e-19 99.8 68 70.6
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 2.8e-19 99.4 67 73.1
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.8e-19 99.4 70 72.9
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 4.8e-19 98.6 70 67.1
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 6.3e-19 98.2 66 72.7
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 6.3e-19 98.2 70 65.7
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 8.2e-19 97.8 70 67.1
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.1e-18 97.4 70 68.6
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 1.6e-17 93.6 70 65.7
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 2.6e-17 92.8 60 70.0
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 1.3e-16 90.5 71 59.2
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.1e-15 87.4 104 50.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 1.1e-15 87.4 100 51.0
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 9.4e-15 84.3 64 64.1
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 1.6e-14 83.6 80 53.8
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 1.6e-14 83.6 94 50.0
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.8e-13 80.1 70 57.1
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 2.3e-13 79.7 69 58.0
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 5.2e-13 78.6 50 78.0
SHI24018 Sapria himalayana HOM05D021190 ORTHO05D000001 2.6e-12 76.3 36 91.7
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 9.7e-12 74.3 70 55.7
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 9.7e-12 74.3 70 54.3
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 2.2e-11 73.2 71 52.1
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 2.8e-11 72.8 55 61.8
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.7e-11 72.4 70 51.4
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 3.7e-11 72.4 39 87.2
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 4.8e-11 72.0 70 51.4
SHI07375 Sapria himalayana HOM05D021190 ORTHO05D000001 6.3e-11 71.6 36 86.1
SHI17992 Sapria himalayana HOM05D021190 ORTHO05D000001 8.2e-11 71.2 36 86.1
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 8.2e-11 71.2 70 51.4
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 3.1e-10 69.3 113 38.9
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 3.1e-10 69.3 39 84.6
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 4.1e-10 68.9 60 56.7
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 1.2e-09 67.4 64 53.1
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 5.9e-09 65.1 46 71.7
SHI28624 Sapria himalayana HOM05D021190 ORTHO05D000001 1.0e-08 64.3 36 80.6
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 1.7e-08 63.5 50 68.0
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 3.8e-08 62.4 72 43.1
SHI28623 Sapria himalayana HOM05D044789 ORTHO05D364484 8.0e-06 54.7 27 96.3


User provided reference genes

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