Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 5.9e-166 587.4 288 100.0
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 8.6e-32 141.7 78 84.6
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.1e-31 141.4 78 83.3
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 2.5e-31 140.2 76 84.2
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 3.3e-31 139.8 78 82.1
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 4.3e-31 139.4 79 81.0
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.3e-31 139.4 76 86.8
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 5.6e-31 139.0 78 84.6
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 5.6e-31 139.0 78 84.6
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.6e-31 139.0 78 84.6
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.6e-31 139.0 78 84.6
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 5.6e-31 139.0 78 80.8
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 7.3e-31 138.7 76 84.2
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 9.5e-31 138.3 78 82.1
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.2e-30 137.9 78 83.3
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 1.2e-30 137.9 78 83.3
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 1.2e-30 137.9 78 83.3
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.6e-30 137.5 76 84.2
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 2.1e-30 137.1 78 80.8
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.1e-30 137.1 78 82.1
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.1e-30 137.1 78 82.1
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.1e-30 137.1 78 82.1
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 2.1e-30 137.1 78 80.8
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 2.1e-30 137.1 78 82.1
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 2.1e-30 137.1 78 83.3
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 2.8e-30 136.7 76 82.9
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 2.8e-30 136.7 78 82.1
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 2.8e-30 136.7 78 82.1
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 2.8e-30 136.7 78 82.1
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 2.8e-30 136.7 78 82.1
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 3.6e-30 136.3 78 80.8
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.6e-30 136.3 84 76.2
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 3.6e-30 136.3 83 75.9
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 3.6e-30 136.3 78 80.8
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 4.7e-30 136.0 78 83.3
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.7e-30 136.0 78 83.3
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 4.7e-30 136.0 78 80.8
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.7e-30 136.0 78 83.3
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.7e-30 136.0 84 75.0
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.7e-30 136.0 84 75.0
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 4.7e-30 136.0 78 82.1
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 4.7e-30 136.0 78 82.1
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 4.7e-30 136.0 78 80.8
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 82.1
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 79.5
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 79.5
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 82.1
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 6.1e-30 135.6 78 80.8
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 8.0e-30 135.2 78 82.1
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 8.0e-30 135.2 78 80.8
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 1.0e-29 134.8 78 80.8
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 1.0e-29 134.8 78 80.8
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 1.0e-29 134.8 78 79.5
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.4e-29 134.4 78 80.8
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.4e-29 134.4 79 79.7
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.4e-29 134.4 78 79.5
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.8e-29 134.0 104 68.3
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 1.8e-29 134.0 78 79.5
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.8e-29 134.0 78 79.5
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 1.8e-29 134.0 78 80.8
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.3e-29 133.7 78 78.2
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 2.3e-29 133.7 78 80.8
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 2.3e-29 133.7 78 80.8
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 2.3e-29 133.7 78 80.8
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 3.0e-29 133.3 78 79.5
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 3.0e-29 133.3 76 81.6
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 3.0e-29 133.3 78 80.8
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 3.0e-29 133.3 78 79.5
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 3.0e-29 133.3 78 79.5
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 3.0e-29 133.3 78 79.5
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 3.0e-29 133.3 78 79.5
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 4.0e-29 132.9 74 82.4
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 4.0e-29 132.9 78 78.2
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 5.2e-29 132.5 74 83.8
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 5.2e-29 132.5 74 83.8
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 5.2e-29 132.5 78 78.2
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 5.2e-29 132.5 78 78.2
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 5.2e-29 132.5 82 78.0
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 5.2e-29 132.5 78 78.2
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 6.8e-29 132.1 78 78.2
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 6.8e-29 132.1 78 78.2
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 6.8e-29 132.1 78 78.2
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 6.8e-29 132.1 92 66.3
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 8.9e-29 131.7 81 76.5
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 8.9e-29 131.7 78 79.5
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 8.9e-29 131.7 78 78.2
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 1.2e-28 131.3 78 78.2
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 1.2e-28 131.3 79 78.5
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.6e-28 130.2 78 78.2
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 2.6e-28 130.2 78 75.6
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 2.6e-28 130.2 84 70.2
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 3.4e-28 129.8 78 76.9
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 3.4e-28 129.8 78 78.2
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 3.4e-28 129.8 78 79.5
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 4.4e-28 129.4 78 78.2
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 9.8e-28 128.3 78 75.6
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 1.3e-27 127.9 78 75.6
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.3e-27 127.9 76 77.6
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 1.7e-27 127.5 76 78.9
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.7e-27 127.5 76 78.9
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 1.7e-27 127.5 78 76.9
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 2.9e-27 126.7 78 76.9
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 2.9e-27 126.7 78 75.6
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 2.9e-27 126.7 78 78.2
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 3.7e-27 126.3 87 70.1
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 4.9e-27 125.9 76 75.0
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 4.9e-27 125.9 76 75.0
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 4.9e-27 125.9 76 77.6
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 4.9e-27 125.9 78 75.6
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 4.9e-27 125.9 78 76.9
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 6.4e-27 125.6 78 74.4
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 6.4e-27 125.6 78 73.1
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 6.4e-27 125.6 78 73.1
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 6.4e-27 125.6 78 73.1
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.1e-26 124.8 78 73.1
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 1.4e-26 124.4 77 72.7
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 1.8e-26 124.0 78 73.1
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 1.8e-26 124.0 78 73.1
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.8e-26 124.0 110 56.4
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 2.4e-26 123.6 74 77.0
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 2.4e-26 123.6 78 73.1
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 3.2e-26 123.2 76 73.7
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 3.2e-26 123.2 76 73.7
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 4.1e-26 122.9 78 71.8
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 7.8e-25 118.6 78 73.1
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 1.0e-24 118.2 83 66.3
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 3.9e-24 116.3 74 70.3
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 2.5e-23 113.6 89 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.3e-23 112.8 110 53.6
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 9.5e-23 111.7 78 66.7
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 1.6e-22 110.9 113 52.2
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.0e-21 108.2 76 72.4
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.0e-21 108.2 78 70.5
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 1.8e-21 107.5 110 50.9
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 3.1e-21 106.7 72 66.7
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 5.2e-21 105.9 76 72.4
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.5e-20 104.4 74 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.4e-20 102.8 75 70.7
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.4e-18 97.1 110 47.3
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 9.2e-18 95.1 110 48.2
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 2.0e-12 77.4 44 75.0
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 5.8e-12 75.9 44 72.7
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.2e-11 73.9 53 62.3
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 1.1e-10 71.6 48 62.5
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 3.5e-09 66.6 50 58.0
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-09 65.9 65 50.8
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 6.0e-09 65.9 47 61.7
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 5.6e-07 59.3 36 66.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 1.6e-06 57.8 46 54.3
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.6e-06 57.8 33 81.8
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 1.6e-06 57.8 43 65.1
Lsat_1_v5_gn_4_144501 Lactuca sativa HOM05D000361 ORTHO05D005006 4.7e-06 56.2 33 78.8


User provided reference genes

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