Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 8.1e-185 650.2 315 100.0
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.6e-98 362.8 296 60.8
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 2.4e-96 356.3 302 59.6
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 3.2e-96 355.9 293 60.8
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 5.4e-96 355.1 301 59.5
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 9.2e-96 354.4 300 58.7
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 2.7e-95 352.8 300 58.0
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.3e-94 349.7 300 57.7
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 4.3e-93 345.5 302 56.6
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.6e-93 345.1 297 57.9
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.8e-91 340.1 292 57.2
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 3.1e-91 339.3 351 49.9
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 5.2e-91 338.6 301 56.5
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 2.6e-90 336.3 296 59.8
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 3.4e-90 335.9 300 55.3
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 3.4e-90 335.9 300 55.3
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 2.2e-89 333.2 289 59.2
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 2.9e-89 332.8 315 53.7
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 8.3e-89 331.3 294 58.5
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 1.4e-88 330.5 297 57.2
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 3.2e-88 329.3 300 55.3
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 4.1e-88 328.9 294 57.5
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 5.4e-88 328.6 300 55.7
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 5.4e-88 328.6 284 59.2
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 5.4e-88 328.6 239 64.9
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 7.1e-88 328.2 292 57.5
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 7.1e-88 328.2 284 56.0
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 9.2e-88 327.8 295 56.6
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 9.2e-88 327.8 295 56.6
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 9.2e-88 327.8 302 51.7
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 2.7e-87 326.2 252 62.7
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 6.0e-87 325.1 290 56.9
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 6.0e-87 325.1 280 58.2
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 7.8e-87 324.7 294 57.1
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.0e-86 324.3 302 54.6
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.0e-86 324.3 299 55.9
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 1.3e-86 323.9 282 57.4
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.3e-86 323.9 292 54.1
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.7e-86 323.6 291 56.0
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 2.3e-86 323.2 299 52.8
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 2.3e-86 323.2 289 57.1
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 3.0e-86 322.8 298 54.7
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.9e-86 322.4 278 59.4
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 5.1e-86 322.0 306 52.3
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 6.6e-86 321.6 296 53.4
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 6.6e-86 321.6 293 55.3
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 8.6e-86 321.2 294 53.7
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.1e-85 320.9 296 54.4
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.5e-85 320.5 288 56.9
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.5e-85 320.5 300 54.0
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 2.5e-85 319.7 315 54.0
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 2.5e-85 319.7 306 54.9
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 3.3e-85 319.3 299 52.2
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 3.3e-85 319.3 301 54.8
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 1.6e-84 317.0 299 51.5
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 2.1e-84 316.6 285 56.5
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 2.1e-84 316.6 296 52.4
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 3.6e-84 315.8 304 55.6
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 3.6e-84 315.8 300 51.0
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 4.7e-84 315.5 305 50.8
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 6.2e-84 315.1 294 55.1
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.4e-83 313.9 242 62.8
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 3.1e-83 312.8 289 54.3
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 3.1e-83 312.8 284 54.6
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 5.2e-83 312.0 296 53.7
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 6.8e-83 311.6 289 53.6
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 8.9e-83 311.2 298 54.7
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.2e-82 310.8 297 52.5
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.2e-82 310.8 299 50.2
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 2.6e-82 309.7 284 53.2
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 9.9e-82 307.8 231 62.8
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 9.9e-82 307.8 231 62.8
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.9e-81 306.2 290 53.8
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.8e-81 305.8 291 54.0
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.1e-80 304.3 239 59.8
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.2e-80 302.8 312 50.6
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 9.2e-80 301.2 282 55.0
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 2.7e-79 299.7 247 59.1
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 3.5e-79 299.3 291 54.0
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 6.0e-79 298.5 294 53.7
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.0e-78 297.7 218 63.8
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 6.6e-78 295.0 220 62.7
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.9e-77 293.5 255 57.6
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 2.5e-77 293.1 314 48.1
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 9.6e-77 291.2 265 54.3
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 5.2e-75 285.4 209 64.6
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 3.4e-74 282.7 267 55.8
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 8.4e-73 278.1 200 65.0
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 3.5e-71 272.7 269 52.8
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 7.8e-71 271.6 200 65.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.1e-69 267.7 197 65.5
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 5.6e-69 265.4 312 46.8
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.5e-66 257.3 261 53.6
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 3.4e-66 256.1 228 58.3
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 5.1e-62 242.3 246 53.3
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 5.1e-62 242.3 246 53.3
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 2.4e-59 233.4 280 43.6
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 5.8e-58 228.8 228 48.2
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 7.6e-58 228.4 181 60.2
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 3.5e-55 219.5 229 47.6
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.1e-53 214.5 148 67.6
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 7.4e-53 211.8 317 41.0
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 6.9e-51 205.3 198 48.0
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.6e-47 194.1 133 66.9
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 6.0e-47 192.2 213 46.9
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.0e-46 191.4 154 59.1
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.1e-46 189.1 248 46.4
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 7.4e-45 185.3 239 40.6
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 6.3e-44 182.2 128 65.6
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 4.8e-36 156.0 191 42.4
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.8e-27 127.5 227 35.2
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 7.7e-26 122.1 98 55.1
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 6.5e-25 119.0 213 31.9
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.6e-18 97.8 55 69.1
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 2.6e-18 97.1 127 42.5
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.9e-16 90.9 50 78.0
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.9e-16 90.9 50 78.0
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 1.0e-14 85.1 50 74.0
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.0e-14 85.1 50 74.0
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.8e-14 84.3 49 73.5
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.3e-14 84.0 199 32.2
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 8.8e-14 82.0 103 36.9
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 7.2e-08 62.4 92 39.1


User provided reference genes

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