Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 0.0e+00 1102.0 538 100.0
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 5.8e-167 591.7 464 63.1
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.6e-164 583.6 464 63.1
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 2.3e-163 579.7 465 62.6
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 3.9e-163 578.9 468 63.7
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 1.3e-161 573.9 473 63.4
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 8.2e-161 571.2 469 60.6
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.1e-160 570.9 462 61.9
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 2.4e-160 569.7 460 63.3
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 2.4e-160 569.7 478 61.7
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 2.4e-160 569.7 453 63.8
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 3.1e-160 569.3 465 61.1
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 9.0e-160 567.8 474 61.4
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.5e-159 567.0 473 62.6
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 4.5e-159 565.5 469 62.5
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 4.5e-159 565.5 458 62.2
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 7.7e-159 564.7 467 61.5
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 7.7e-159 564.7 463 62.2
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 1.7e-158 563.5 470 61.5
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 3.8e-158 562.4 490 59.8
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.8e-158 562.4 468 60.5
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 6.5e-158 561.6 467 60.4
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.5e-158 561.6 471 61.1
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 8.5e-158 561.2 464 61.2
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.1e-157 560.8 475 60.2
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.1e-157 560.8 471 60.9
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.4e-157 560.5 457 60.6
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.4e-157 560.5 471 61.1
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 4.2e-157 558.9 477 60.8
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 7.2e-157 558.1 469 61.2
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-156 557.4 471 61.1
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 1.2e-156 557.4 471 61.6
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-156 555.8 477 60.8
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-156 555.8 470 61.3
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 6.1e-156 555.1 456 62.3
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.8e-155 553.5 461 62.3
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.9e-155 552.4 467 61.0
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 6.7e-155 551.6 456 61.0
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.1e-154 550.8 469 59.7
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 5.7e-154 548.5 469 58.4
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 5.7e-154 548.5 467 60.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 7.4e-154 548.1 462 59.7
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.3e-153 547.4 470 59.1
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 3.7e-153 545.8 470 58.7
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 1.5e-151 540.4 469 58.6
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.0e-151 540.0 483 57.8
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 2.0e-151 540.0 470 59.8
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 4.5e-151 538.9 464 57.8
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.7e-150 537.0 472 56.1
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 2.9e-150 536.2 462 60.8
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 8.5e-150 534.6 471 59.2
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.4e-149 533.9 459 59.3
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.4e-149 533.9 466 59.7
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 2.5e-149 533.1 466 57.9
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.6e-148 530.4 478 56.5
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 4.7e-148 528.9 458 59.8
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 4.7e-148 528.9 460 57.0
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.8e-147 526.9 445 60.0
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 3.0e-147 526.2 400 63.5
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 3.9e-147 525.8 460 57.8
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 8.8e-147 524.6 455 58.0
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 1.1e-146 524.2 472 56.6
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 3.3e-146 522.7 459 56.6
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 4.4e-146 522.3 462 59.3
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 7.4e-146 521.5 469 56.5
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 7.4e-146 521.5 469 56.5
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 7.4e-146 521.5 462 57.6
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.8e-145 519.6 474 57.0
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 3.7e-145 519.2 469 56.3
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 3.7e-145 519.2 469 56.3
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 6.3e-145 518.5 470 57.2
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 8.2e-145 518.1 472 55.9
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.8e-144 516.9 455 57.4
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 3.1e-144 516.2 455 56.9
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 3.5e-143 512.7 498 53.6
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 2.2e-142 510.0 455 56.7
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 3.8e-142 509.2 501 53.3
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.5e-141 507.3 507 51.9
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 3.2e-141 506.1 474 56.5
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 7.2e-141 505.0 454 58.1
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 4.7e-140 502.3 457 58.2
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.8e-139 500.4 466 57.7
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.2e-135 487.6 468 54.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 3.5e-135 486.1 384 63.5
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.5e-133 479.9 506 52.8
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.2e-133 479.6 463 55.5
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.1e-132 476.9 459 54.9
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 1.8e-131 473.8 455 53.8
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 8.8e-131 471.5 454 53.7
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.0e-130 470.3 374 60.4
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 6.3e-129 465.3 466 53.2
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 6.3e-129 465.3 474 53.4
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 1.8e-128 463.8 380 59.5
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.3e-126 457.6 360 62.2
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 3.8e-126 456.1 407 56.8
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.0e-115 421.4 454 52.0
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 8.6e-110 401.7 487 45.4
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.2e-106 391.3 334 57.8
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.7e-102 377.5 405 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 3.0e-102 376.7 456 43.0
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 8.6e-102 375.2 464 44.0
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.5e-101 373.6 284 67.6
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 2.4e-96 357.1 298 59.7
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 5.1e-94 349.4 466 44.2
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.6e-87 327.8 390 45.4
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.3e-86 324.7 435 41.4
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 9.9e-74 282.0 222 64.9
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 2.4e-72 277.3 259 54.8
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 4.3e-61 240.0 305 42.3
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.6e-58 230.7 255 47.1
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 5.5e-56 223.0 377 34.5
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-56 222.6 207 55.6
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.1e-56 222.6 207 55.6
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-55 221.1 200 56.0
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-55 221.1 200 56.0
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 1.0e-54 218.8 154 63.0
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.8e-54 218.0 154 63.6
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 4.5e-50 203.4 235 49.4
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 2.3e-46 191.0 143 65.7
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 5.0e-41 173.3 139 59.0
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.0e-38 165.6 154 54.5
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.6e-34 151.0 158 49.4
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 3.4e-34 150.6 98 66.3
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.4e-30 138.7 430 26.5
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 6.7e-30 136.3 135 59.3
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 7.4e-29 132.9 89 67.4
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-26 125.6 207 39.1
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-26 125.6 207 39.1
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-26 125.6 207 39.1
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-26 125.6 207 39.1
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-26 125.6 207 39.1
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-26 125.6 207 39.1
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-26 125.6 207 39.1
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-26 124.0 200 39.0
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-26 124.0 200 39.0
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-26 124.0 200 39.0
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-26 124.0 200 39.0
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-26 124.0 200 39.0
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-26 124.0 200 39.0
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 5.5e-24 116.7 119 53.8
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 2.3e-22 111.3 89 60.7
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 9.7e-21 105.9 174 34.5
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 9.7e-21 105.9 350 25.7
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 7.0e-19 99.8 61 65.6
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 9.1e-19 99.4 79 67.1
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.0e-17 95.9 146 39.0
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 9.4e-16 89.4 47 80.9
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-15 87.4 141 34.8
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 3.6e-15 87.4 87 57.5
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 2.2e-12 78.2 52 67.3
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 1.4e-11 75.5 199 30.2
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 1.0e-09 69.3 102 34.3
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 3.6e-07 60.8 60 43.3
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.4e-06 58.9 167 31.1
Hma1.2p1_2578F.1_g324720 Hydrangea macrophylla HOM05D002465 ORTHO05D036401 2.3e-06 58.2 57 63.2
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.8e-06 56.2 56 53.6


User provided reference genes

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