Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.0e-125 453.4 225 100.0
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 5.7e-31 138.7 187 45.5
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.6e-30 137.1 185 47.0
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 4.8e-30 135.6 188 46.3
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 4.1e-29 132.5 184 44.6
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 5.3e-29 132.1 185 46.5
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 5.3e-29 132.1 184 46.2
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 9.0e-29 131.3 184 46.2
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 5.9e-28 128.6 186 46.2
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.3e-27 127.5 190 43.7
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.3e-27 127.5 189 44.4
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.7e-27 127.1 184 44.6
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 2.9e-27 126.3 186 45.2
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.8e-27 125.9 187 45.5
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.8e-27 125.9 184 44.0
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 8.5e-27 124.8 188 43.6
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 8.5e-27 124.8 187 42.2
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 8.5e-27 124.8 186 46.2
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.5e-27 124.8 198 43.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.1e-26 124.4 187 46.0
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.4e-26 124.0 190 44.7
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.4e-26 124.0 183 46.4
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 1.9e-26 123.6 183 43.7
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.9e-26 123.6 191 42.4
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.9e-26 123.6 188 43.1
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 2.5e-26 123.2 185 44.3
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 2.5e-26 123.2 186 44.1
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.5e-26 123.2 190 45.8
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 2.5e-26 123.2 188 45.2
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 2.5e-26 123.2 189 43.9
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 3.2e-26 122.9 186 44.6
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.2e-26 122.5 188 43.6
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 5.5e-26 122.1 187 42.8
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 5.5e-26 122.1 187 45.5
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 7.2e-26 121.7 194 44.8
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 7.2e-26 121.7 184 42.9
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 9.4e-26 121.3 186 43.5
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 9.4e-26 121.3 187 43.3
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 1.2e-25 120.9 187 41.7
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-25 120.9 183 43.7
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 1.6e-25 120.6 184 43.5
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 2.1e-25 120.2 186 43.5
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 2.1e-25 120.2 196 45.4
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.6e-25 119.4 181 42.0
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 3.6e-25 119.4 188 41.5
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 3.6e-25 119.4 190 44.7
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 3.6e-25 119.4 187 40.1
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 6.1e-25 118.6 189 43.4
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 6.1e-25 118.6 196 45.4
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 7.9e-25 118.2 184 43.5
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 7.9e-25 118.2 186 44.1
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 7.9e-25 118.2 186 44.1
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 7.9e-25 118.2 190 43.2
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 7.9e-25 118.2 186 44.1
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 7.9e-25 118.2 196 44.9
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 7.9e-25 118.2 193 42.0
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 1.0e-24 117.9 187 42.2
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.0e-24 117.9 184 44.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-24 117.9 198 41.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.0e-24 117.9 186 44.1
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.0e-24 117.9 188 41.5
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.4e-24 117.5 187 42.8
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.4e-24 117.5 192 44.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.4e-24 117.5 192 44.3
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.4e-24 117.5 182 41.8
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.3e-24 116.7 185 42.2
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 2.3e-24 116.7 187 42.8
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 3.0e-24 116.3 192 42.2
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 3.0e-24 116.3 189 44.4
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 3.9e-24 115.9 194 43.8
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 3.9e-24 115.9 186 41.9
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 5.1e-24 115.5 190 43.7
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.1e-24 115.5 186 43.5
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 6.7e-24 115.2 187 39.6
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-23 114.4 190 43.2
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 2.0e-23 113.6 195 41.0
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.0e-23 113.6 182 41.2
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.5e-23 113.2 182 42.3
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 2.5e-23 113.2 190 43.2
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 3.3e-23 112.8 188 42.0
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 4.3e-23 112.5 193 38.9
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.7e-23 112.1 182 44.0
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 5.7e-23 112.1 189 43.9
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 9.7e-23 111.3 186 40.9
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.3e-22 110.9 193 40.9
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.3e-22 110.9 189 42.9
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 2.8e-22 109.8 188 42.6
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 4.8e-22 109.0 194 39.2
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 4.8e-22 109.0 182 40.1
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 6.3e-22 108.6 186 41.9
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 6.3e-22 108.6 186 37.6
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 6.3e-22 108.6 188 42.0
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 8.2e-22 108.2 200 39.5
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-21 107.8 188 42.0
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.8e-21 107.1 189 39.7
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 2.4e-21 106.7 189 40.7
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 2.4e-21 106.7 191 40.8
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 4.1e-21 105.9 188 41.0
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 4.1e-21 105.9 193 43.0
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 6.9e-21 105.1 194 37.6
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 9.1e-21 104.8 189 39.2
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.2e-20 104.4 183 39.9
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 2.6e-20 103.2 189 39.2
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 2.6e-20 103.2 185 40.5
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 4.5e-20 102.4 198 37.9
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 4.5e-20 102.4 185 43.2
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 5.9e-20 102.1 186 39.2
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.9e-20 102.1 189 39.7
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 7.7e-20 101.7 187 39.6
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.3e-19 100.9 208 38.5
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.3e-19 100.9 190 36.3
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.7e-19 100.5 180 40.0
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.2e-19 100.1 196 37.2
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 6.5e-19 98.6 186 39.8
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.1e-18 97.8 197 36.5
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.4e-18 97.4 201 40.3
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.4e-18 97.4 185 42.2
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 5.5e-18 95.5 188 38.3
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 7.2e-18 95.1 183 38.3
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 9.4e-18 94.7 189 38.6
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 9.4e-18 94.7 190 40.0
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.2e-17 94.4 190 35.8
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.7e-17 93.2 193 36.3
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 4.7e-17 92.4 188 36.7
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 4.7e-17 92.4 184 37.0
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 7.9e-17 91.7 186 37.1
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 7.9e-17 91.7 189 36.5
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 7.9e-17 91.7 192 35.9
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 1.4e-16 90.9 188 36.2
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.3e-16 90.1 187 36.9
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 3.9e-16 89.4 179 35.8
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 5.1e-16 89.0 190 37.4
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 5.1e-16 89.0 191 38.7
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 5.1e-16 89.0 182 37.9
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 6.7e-16 88.6 187 39.0
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 8.8e-16 88.2 185 37.3
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 8.8e-16 88.2 191 35.6
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 2.6e-15 86.7 184 38.6
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 7.4e-15 85.1 190 38.4
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 7.4e-15 85.1 202 34.7
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 9.7e-15 84.7 187 35.8
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 9.7e-15 84.7 206 34.0
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.3e-14 84.3 193 37.3
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 2.8e-14 83.2 186 35.5
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 2.8e-14 83.2 186 36.6
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 2.8e-14 83.2 186 35.5
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 3.7e-14 82.8 182 36.3
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 6.3e-14 82.0 188 36.2
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 8.2e-14 81.6 213 33.8
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.1e-13 81.3 199 34.2
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.1e-13 81.3 184 38.0
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 1.4e-13 80.9 186 37.1
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 1.8e-13 80.5 186 34.9
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 4.1e-13 79.3 151 39.7
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 5.3e-13 79.0 221 30.3
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.7e-11 73.9 188 37.2
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 4.2e-10 69.3 189 33.9
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 7.2e-10 68.6 196 33.7
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 1.6e-09 67.4 202 32.2
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 1.0e-08 64.7 143 32.2
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.0e-08 62.8 151 34.4
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 5.7e-07 58.9 129 35.7
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 5.7e-07 58.9 148 30.4
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 9.7e-07 58.2 177 30.5
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 8.2e-06 55.1 173 31.8
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 8.2e-06 55.1 92 42.4


User provided reference genes

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