Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 6.3e-84 313.9 143 100.0
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 8.6e-41 170.6 108 75.0
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.9e-40 169.5 86 88.4
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.9e-40 169.5 86 88.4
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 3.3e-40 168.7 86 88.4
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 4.2e-40 168.3 86 88.4
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 4.2e-40 168.3 86 87.2
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 4.2e-40 168.3 106 76.4
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 7.2e-40 167.5 106 75.5
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 7.2e-40 167.5 86 87.2
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 7.2e-40 167.5 107 75.7
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 9.5e-40 167.2 85 89.4
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 9.5e-40 167.2 106 76.4
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 1.2e-39 166.8 108 74.1
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.2e-39 166.8 106 76.4
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.2e-39 166.8 92 82.6
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 2.1e-39 166.0 106 75.5
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 2.1e-39 166.0 86 88.4
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 3.6e-39 165.2 85 88.2
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 3.6e-39 165.2 86 87.2
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 4.7e-39 164.9 86 87.2
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 4.7e-39 164.9 86 87.2
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 4.7e-39 164.9 94 81.9
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 6.1e-39 164.5 86 88.4
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 6.1e-39 164.5 86 87.2
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 6.1e-39 164.5 86 88.4
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 6.1e-39 164.5 108 73.1
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 8.0e-39 164.1 106 75.5
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 8.0e-39 164.1 106 75.5
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 8.0e-39 164.1 86 87.2
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 8.0e-39 164.1 86 87.2
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.0e-38 163.7 106 74.5
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.0e-38 163.7 106 74.5
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 1.0e-38 163.7 86 88.4
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 1.0e-38 163.7 86 86.0
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 1.0e-38 163.7 86 87.2
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 1.0e-38 163.7 86 87.2
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.4e-38 163.3 106 74.5
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.4e-38 163.3 86 87.2
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 1.4e-38 163.3 86 87.2
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 1.8e-38 162.9 86 86.0
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 1.8e-38 162.9 106 73.6
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.8e-38 162.9 92 81.5
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 2.3e-38 162.5 86 87.2
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 2.3e-38 162.5 86 87.2
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.3e-38 162.5 86 87.2
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 3.0e-38 162.2 87 85.1
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 3.0e-38 162.2 86 86.0
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 3.0e-38 162.2 86 86.0
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 3.0e-38 162.2 86 84.9
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 3.0e-38 162.2 106 74.5
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 86.0
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 82.6
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 82.6
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 82.6
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 84.9
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 84.9
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 84.9
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 86.0
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 87.2
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 4.0e-38 161.8 86 83.7
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 5.2e-38 161.4 106 73.6
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 5.2e-38 161.4 106 73.6
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 5.2e-38 161.4 106 73.6
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 5.2e-38 161.4 86 86.0
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 6.8e-38 161.0 88 81.8
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 6.8e-38 161.0 86 83.7
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 8.9e-38 160.6 86 82.6
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 8.9e-38 160.6 90 82.2
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 8.9e-38 160.6 86 84.9
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 8.9e-38 160.6 86 82.6
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 8.9e-38 160.6 90 83.3
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 1.2e-37 160.2 89 80.9
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.2e-37 160.2 89 80.9
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 1.2e-37 160.2 86 86.0
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 1.2e-37 160.2 86 84.9
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.2e-37 160.2 86 86.0
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.2e-37 160.2 86 86.0
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 1.5e-37 159.8 85 87.1
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 1.5e-37 159.8 106 72.6
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.0e-37 159.5 102 74.5
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 2.0e-37 159.5 86 82.6
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 2.6e-37 159.1 106 72.6
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 3.4e-37 158.7 89 79.8
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 3.4e-37 158.7 86 82.6
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 3.4e-37 158.7 86 83.7
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 3.4e-37 158.7 86 83.7
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 3.4e-37 158.7 86 84.9
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 4.4e-37 158.3 86 82.6
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 4.4e-37 158.3 86 84.9
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 4.4e-37 158.3 86 83.7
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 4.4e-37 158.3 86 83.7
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 4.4e-37 158.3 86 81.4
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.4e-37 158.3 86 82.6
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 4.4e-37 158.3 106 71.7
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 5.7e-37 157.9 86 82.6
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 5.7e-37 157.9 86 83.7
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 7.5e-37 157.5 102 73.5
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 7.5e-37 157.5 86 81.4
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 7.5e-37 157.5 102 73.5
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 7.5e-37 157.5 102 73.5
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 7.5e-37 157.5 86 84.9
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 9.8e-37 157.1 86 83.7
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 1.3e-36 156.8 86 82.6
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.3e-36 156.8 86 82.6
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 1.3e-36 156.8 84 84.5
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 2.2e-36 156.0 85 81.2
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 2.2e-36 156.0 85 81.2
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 3.7e-36 155.2 83 83.1
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 3.7e-36 155.2 93 76.3
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 3.7e-36 155.2 86 80.2
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 4.9e-36 154.8 82 84.1
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 4.9e-36 154.8 83 84.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 6.3e-36 154.5 88 79.5
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 8.3e-36 154.1 86 83.7
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 1.1e-35 153.7 85 80.0
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.4e-35 152.5 86 79.1
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.6e-34 149.8 86 79.1
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 5.9e-34 147.9 81 81.5
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 1.7e-33 146.4 86 74.4
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.3e-33 146.0 86 76.7
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 3.8e-33 145.2 76 82.9
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 3.8e-33 145.2 87 74.7
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 8.6e-33 144.1 82 79.3
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.1e-32 143.7 78 83.3
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.1e-32 143.7 78 83.3
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-32 141.4 84 72.6
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 2.2e-28 129.4 70 84.3
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 2.9e-28 129.0 86 64.0
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.1e-27 125.2 78 71.8
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 2.3e-25 119.4 86 61.6
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 3.0e-25 119.0 82 70.7
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 5.0e-25 118.2 86 59.3
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 5.0e-25 118.2 106 57.5
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 3.3e-24 115.5 66 78.8
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.9e-19 99.8 63 73.0
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.3e-16 89.0 53 75.5
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 3.6e-15 85.5 47 78.7
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 5.8e-13 78.2 58 63.8
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 4.9e-12 75.1 36 83.3
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 3.2e-11 72.4 34 88.2
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 1.6e-10 70.1 44 70.5
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 2.1e-10 69.7 38 73.7
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 1.0e-09 67.4 50 66.0
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.0e-09 65.9 82 39.0
PGSC0003DMG402011506 Solanum tuberosum HOM05D000200 ORTHO05D017741 1.9e-08 63.2 86 43.0
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 4.3e-08 62.0 37 75.7
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 1.2e-07 60.5 29 86.2


User provided reference genes

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