Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.8e-210 735.7 384 100.0
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 9.2e-98 361.3 272 70.2
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.5e-95 354.0 276 68.8
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 3.3e-95 352.8 299 63.2
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.3e-95 352.8 275 68.7
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 4.3e-95 352.4 270 68.5
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 5.6e-95 352.1 273 67.8
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 1.2e-94 350.9 270 67.8
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 2.1e-94 350.1 303 63.4
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 2.8e-94 349.7 274 66.1
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 2.8e-94 349.7 272 69.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 4.7e-94 349.0 273 67.0
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.0e-93 347.8 324 61.7
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 4.0e-93 345.9 311 62.4
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 5.2e-93 345.5 270 67.8
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 8.9e-93 344.7 303 62.4
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 8.9e-93 344.7 324 59.9
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 8.9e-93 344.7 303 62.0
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.2e-92 344.4 273 65.6
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.2e-92 344.4 303 62.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.5e-92 344.0 272 65.4
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 2.0e-92 343.6 274 66.4
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 2.0e-92 343.6 274 65.0
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.4e-92 342.8 273 65.6
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 3.4e-92 342.8 271 65.3
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 3.4e-92 342.8 274 64.6
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 4.4e-92 342.4 303 61.1
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 5.8e-92 342.0 272 65.1
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 5.8e-92 342.0 303 62.0
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 7.5e-92 341.7 271 65.7
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 9.8e-92 341.3 274 64.2
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.3e-91 340.9 271 66.1
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.3e-91 340.9 271 66.8
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 1.7e-91 340.5 303 61.7
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 2.2e-91 340.1 289 64.7
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 2.2e-91 340.1 270 67.0
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.2e-91 340.1 315 61.3
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 2.2e-91 340.1 270 67.4
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 2.9e-91 339.7 263 65.8
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 4.9e-91 339.0 269 67.3
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 6.4e-91 338.6 277 66.1
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 8.3e-91 338.2 271 66.1
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 8.3e-91 338.2 278 65.5
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 8.3e-91 338.2 274 63.5
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 8.3e-91 338.2 325 59.4
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.1e-90 337.8 279 65.6
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.1e-90 337.8 271 66.1
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.9e-90 337.0 271 65.7
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.9e-90 337.0 304 60.5
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 3.2e-90 336.3 271 65.7
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.1e-90 335.9 271 64.6
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 4.1e-90 335.9 270 64.8
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 1.6e-89 334.0 270 65.2
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.0e-89 333.6 271 64.2
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 2.0e-89 333.6 271 64.9
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.7e-89 333.2 351 57.0
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 3.5e-89 332.8 270 64.4
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 4.6e-89 332.4 271 65.3
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.6e-89 332.4 272 65.4
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.0e-88 331.3 303 59.1
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.7e-88 330.5 272 64.0
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 3.0e-88 329.7 271 65.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 3.0e-88 329.7 272 65.1
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 3.9e-88 329.3 280 63.9
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 3.9e-88 329.3 270 64.1
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 5.0e-88 328.9 304 60.5
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 6.6e-88 328.6 274 65.0
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 8.6e-88 328.2 272 64.0
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.5e-87 327.4 304 59.9
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.9e-87 327.0 391 51.7
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 1.9e-87 327.0 274 63.1
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.5e-87 326.6 296 61.1
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 9.5e-87 324.7 305 59.0
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 9.5e-87 324.7 273 65.9
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 9.5e-87 324.7 306 59.5
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.1e-86 323.6 315 58.1
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.1e-86 323.6 302 59.6
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 2.3e-85 320.1 268 64.9
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.0e-85 319.3 270 62.2
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 6.8e-85 318.5 270 62.2
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.2e-84 317.8 318 57.9
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 9.8e-84 314.7 276 62.7
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 3.2e-82 309.7 338 54.1
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 3.2e-82 309.7 338 54.1
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 7.1e-82 308.5 334 53.9
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 3.9e-80 302.8 244 64.8
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 5.8e-76 288.9 270 57.0
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 9.9e-76 288.1 287 56.1
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.2e-75 287.0 237 65.4
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.9e-75 286.6 243 65.0
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.8e-75 286.2 236 64.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 4.9e-75 285.8 242 62.4
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.8e-70 270.0 350 47.7
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 4.7e-70 269.2 240 60.8
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 8.1e-70 268.5 278 53.2
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.1e-69 266.5 237 61.6
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 9.9e-68 261.5 269 50.9
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.6e-65 254.2 273 50.2
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.7e-65 253.4 236 58.1
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.3e-64 250.4 264 53.8
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 6.2e-62 242.3 271 47.6
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.9e-58 230.7 183 68.3
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 2.1e-57 227.3 326 46.9
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 6.7e-56 222.2 318 45.6
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 8.7e-56 221.9 149 73.8
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.5e-55 220.3 148 73.0
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 4.0e-53 213.0 147 70.1
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 4.9e-51 206.1 149 73.8
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 2.7e-49 200.3 319 39.5
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.3e-48 198.0 169 61.5
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.4e-42 177.9 155 61.3
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 7.1e-42 175.6 199 50.8
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 3.5e-41 173.3 220 45.9
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 7.9e-41 172.2 119 73.9
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 1.3e-40 171.4 282 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 5.1e-40 169.5 152 58.6
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 6.3e-38 162.5 156 59.0
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 2.4e-37 160.6 164 54.9
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 2.4e-37 160.6 164 54.9
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 9.0e-37 158.7 118 68.6
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 5.0e-35 152.9 240 38.8
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 2.5e-34 150.6 160 52.5
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 3.6e-33 146.7 89 78.7
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 2.3e-32 144.1 179 51.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 6.3e-22 109.4 131 51.1
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 2.0e-20 104.4 120 51.7
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.6e-17 94.7 76 64.5
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 5.3e-13 79.7 101 47.5
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 9.1e-13 79.0 55 67.3
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.2e-12 78.6 108 45.4
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 3.6e-09 67.0 93 43.0
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 1.8e-08 64.7 37 75.7
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 3.0e-08 63.9 96 43.8
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 6.7e-08 62.8 35 80.0


User provided reference genes

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