Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08967 Sapria himalayana HOM05D000269 ORTHO05D365691 1.7e-102 375.9 185 100.0
Manes.07G110200 Manihot esculenta HOM05D000269 ORTHO05D005780 6.3e-12 75.1 117 42.7
Duzib114G0270 Durio zibethinus HOM05D000269 ORTHO05D005780 2.4e-11 73.2 114 41.2
Thecc.10G057900 Theobroma cacao HOM05D000269 ORTHO05D005780 2.7e-10 69.7 114 39.5
Actinidia13853 Actinidia chinensis HOM05D000269 ORTHO05D005780 3.5e-10 69.3 114 39.5
Manes.10G037500 Manihot esculenta HOM05D000269 ORTHO05D005780 3.5e-10 69.3 113 39.8
CiPaw.02G180000 Carya illinoinensis HOM05D000269 ORTHO05D005780 7.7e-10 68.2 114 39.5
Peaxi162Scf00015g02217 Petunia axillaris HOM05D000269 ORTHO05D005780 7.7e-10 68.2 117 39.3
Potri.010G211400 Populus trichocarpa HOM05D000269 ORTHO05D005780 7.7e-10 68.2 117 38.5
Atru.chr12.563 Acer truncatum HOM05D000269 ORTHO05D005780 1.0e-09 67.8 114 37.7
Oeu025629.1 Olea europaea HOM05D000269 ORTHO05D005780 1.0e-09 67.8 114 38.6
Oeu025630.1 Olea europaea HOM05D000269 ORTHO05D005780 1.0e-09 67.8 114 38.6
Prupe.2G227400 Prunus persica HOM05D000269 ORTHO05D005780 1.0e-09 67.8 114 37.7
Lj8A90T47 Lonicera japonica HOM05D000269 ORTHO05D005780 1.3e-09 67.4 114 40.4
Potri.008G049500 Populus trichocarpa HOM05D000269 ORTHO05D005780 1.3e-09 67.4 114 38.6
Dinv31408 Davidia involucrata HOM05D000269 ORTHO05D005780 1.7e-09 67.0 117 38.5
Hma1.2p1_0402F.1_g145070 Hydrangea macrophylla HOM05D000269 ORTHO05D005780 1.7e-09 67.0 114 36.8
Hma1.2p1_1483F.1_g286270 Hydrangea macrophylla HOM05D000269 ORTHO05D005780 1.7e-09 67.0 114 36.8
Cfa001541 Carpinus fangiana HOM05D000269 ORTHO05D005780 2.3e-09 66.6 114 39.5
Gohir.D10G219600 Gossypium hirsutum HOM05D000269 ORTHO05D005780 2.3e-09 66.6 114 38.6
Gorai.011G246300 Gossypium raimondii HOM05D000269 ORTHO05D005780 2.3e-09 66.6 114 38.6
Rhsim09G0158600 Rhododendron simsii HOM05D000269 ORTHO05D005780 2.3e-09 66.6 114 38.6
CANSAT56G0173 Cannabis sativa HOM05D000269 ORTHO05D005780 2.9e-09 66.2 114 36.8
Glyma.18G286000 Glycine max HOM05D000269 ORTHO05D005780 2.9e-09 66.2 117 38.5
Lalb_Chr17g0336281 Lupinus albus HOM05D000269 ORTHO05D005780 2.9e-09 66.2 114 38.6
MD07G1189900 Malus domestica HOM05D000269 ORTHO05D005780 2.9e-09 66.2 114 37.7
QL08p057946 Quercus lobata HOM05D000269 ORTHO05D005780 2.9e-09 66.2 114 37.7
Cc02_g08490 Coffea canephora HOM05D000269 ORTHO05D005780 3.8e-09 65.9 114 38.6
Sabra08G0035500 Salix brachista HOM05D000269 ORTHO05D005780 3.8e-09 65.9 114 38.6
CAN.G1339.6 Capsicum annuum HOM05D000269 ORTHO05D005780 5.0e-09 65.5 114 38.6
Eucgr.G02892 Eucalyptus grandis HOM05D000269 ORTHO05D005780 6.5e-09 65.1 114 38.6
Gohir.A10G211400 Gossypium hirsutum HOM05D000269 ORTHO05D005780 6.5e-09 65.1 114 37.7
Sc09g0007190 Simmondsia chinensis HOM05D000269 ORTHO05D005780 6.5e-09 65.1 114 38.6
Cpa.g.sc1.331 Carica papaya HOM05D000269 ORTHO05D005780 8.6e-09 64.7 117 37.6
VMungo1383G0934 Vigna mungo HOM05D000269 ORTHO05D005780 8.6e-09 64.7 117 37.6
ECA232G4498 Erigeron canadensis HOM05D000269 ORTHO05D005780 1.1e-08 64.3 114 36.8
Lj1g0003201 Lotus japonicus HOM05D000269 ORTHO05D005780 1.1e-08 64.3 114 37.7
Solyc05g054740.3 Solanum lycopersicum HOM05D000269 ORTHO05D005780 1.1e-08 64.3 114 37.7
Sopen05g033210 Solanum pennellii HOM05D000269 ORTHO05D005780 1.1e-08 64.3 114 37.7
PGSC0003DMG400023515 Solanum tuberosum HOM05D000269 ORTHO05D005780 1.1e-08 64.3 114 37.7
EL10Ac2g03460 Beta vulgaris HOM05D000269 ORTHO05D005780 1.5e-08 63.9 114 37.7
AUR62022529 Chenopodium quinoa HOM05D000269 ORTHO05D005780 1.5e-08 63.9 114 37.7
AUR62035960 Chenopodium quinoa HOM05D000269 ORTHO05D005780 1.5e-08 63.9 114 37.7
FAN01G1169 Fragaria x ananassa HOM05D000269 ORTHO05D005780 1.5e-08 63.9 134 35.8
FAN06G1581 Fragaria x ananassa HOM05D000269 ORTHO05D005780 1.5e-08 63.9 134 35.8
FAN06G4499 Fragaria x ananassa HOM05D000269 ORTHO05D005780 1.5e-08 63.9 134 35.8
FAN10G3639 Fragaria x ananassa HOM05D000269 ORTHO05D005780 1.5e-08 63.9 134 35.8
Glyma.02G095500 Glycine max HOM05D000269 ORTHO05D005780 1.5e-08 63.9 117 37.6
Nitab4.5_0000914g0310 Nicotiana tabacum HOM05D000269 ORTHO05D005780 1.5e-08 63.9 117 37.6
Nitab4.5_0004055g0090 Nicotiana tabacum HOM05D000269 ORTHO05D005780 1.5e-08 63.9 117 37.6
SalBow6G1581 Salvia bowleyana HOM05D000269 ORTHO05D005780 1.5e-08 63.9 117 36.8
MSTRG.307 Avicennia marina HOM05D000269 ORTHO05D005780 1.9e-08 63.5 114 36.8
CSS0042668 Camellia sinensis var. sinensis HOM05D000269 ORTHO05D005780 1.9e-08 63.5 114 37.7
Haze_16993 Corylus avellana HOM05D000269 ORTHO05D005780 1.9e-08 63.5 114 39.5
PGR142G3598 Punica granatum HOM05D000269 ORTHO05D005780 1.9e-08 63.5 113 36.3
RcHm_v2.0_Chr1g0365661 Rosa chinensis HOM05D000269 ORTHO05D005780 1.9e-08 63.5 114 37.7
Ciclev10030847m.g Citrus clementina HOM05D000269 ORTHO05D005780 2.5e-08 63.2 114 35.1
Migut.F01516 Erythranthe guttata HOM05D000269 ORTHO05D005780 3.2e-08 62.8 114 36.8
Sabra10G0163400 Salix brachista HOM05D000269 ORTHO05D005780 3.2e-08 62.8 114 37.7
HPP92_012466 Vanilla planifolia HOM05D000269 ORTHO05D005780 3.2e-08 62.8 135 34.8
arahy.Tifrunner.gnm1.ann1.M9HGHS Arachis hypogaea HOM05D000269 ORTHO05D005780 4.2e-08 62.4 117 36.8
arahy.Tifrunner.gnm1.ann1.NDIA0C Arachis hypogaea HOM05D000269 ORTHO05D005780 4.2e-08 62.4 117 36.8
Phvul.008G015600 Phaseolus vulgaris HOM05D000269 ORTHO05D005780 4.2e-08 62.4 117 36.8
unitig_749.g14013 Utricularia gibba HOM05D000269 ORTHO05D005780 4.2e-08 62.4 114 38.6
Aa31LG11G7800 Aethionema arabicum HOM05D000269 ORTHO05D005780 5.5e-08 62.0 114 34.2
ATR0033G011 Amborella trichopoda HOM05D000269 ORTHO05D005780 5.5e-08 62.0 117 36.8
Carub.0006s1171 Capsella rubella HOM05D000269 ORTHO05D005780 7.2e-08 61.6 114 35.1
FvH4_7g21210 Fragaria vesca HOM05D000269 ORTHO05D005780 7.2e-08 61.6 114 36.8
FAN03G3368 Fragaria x ananassa HOM05D000269 ORTHO05D005780 7.2e-08 61.6 114 36.8
TWI38G1332 Tripterygium wilfordii HOM05D000269 ORTHO05D005780 7.2e-08 61.6 114 34.2
HPP92_012576 Vanilla planifolia HOM05D000269 ORTHO05D005780 7.2e-08 61.6 114 36.8
HPP92_019814 Vanilla planifolia HOM05D000269 ORTHO05D005780 7.2e-08 61.6 114 36.8
Ah.10g033230 Amaranthus hybridus HOM05D000269 ORTHO05D005780 9.5e-08 61.2 117 36.8
CARHR199900 Cardamine hirsuta HOM05D000269 ORTHO05D005780 9.5e-08 61.2 114 35.1
DCAR_015230 Daucus carota HOM05D000269 ORTHO05D005780 9.5e-08 61.2 117 35.0
ECA233G0692 Erigeron canadensis HOM05D000269 ORTHO05D005780 9.5e-08 61.2 114 36.0
Thhalv10012850m.g Eutrema salsugineum HOM05D000269 ORTHO05D005780 9.5e-08 61.2 114 35.1
HanXRQChr08g0220011 Helianthus annuus HOM05D000269 ORTHO05D005780 9.5e-08 61.2 114 36.0
Lsat_1_v5_gn_8_17320 Lactuca sativa HOM05D000269 ORTHO05D005780 9.5e-08 61.2 114 36.8
Lalb_Chr10g0091931 Lupinus albus HOM05D000269 ORTHO05D005780 9.5e-08 61.2 117 37.6
Psat3g185920 Pisum sativum HOM05D000269 ORTHO05D005780 9.5e-08 61.2 117 36.8
TPR.G15512 Trifolium pratense HOM05D000269 ORTHO05D005780 9.5e-08 61.2 117 36.8
AL6G24160 Arabidopsis lyrata HOM05D000269 ORTHO05D005780 1.2e-07 60.8 114 34.2
AT5G13550 Arabidopsis thaliana HOM05D000269 ORTHO05D005780 1.2e-07 60.8 114 34.2
CDE04G2531 Ceratophyllum demersum HOM05D000269 ORTHO05D005780 1.2e-07 60.8 114 36.0
Ca_14326_v3 Cicer arietinum L. HOM05D000269 ORTHO05D005780 1.2e-07 60.8 114 36.8
Nn2g10503 Nelumbo nucifera HOM05D000269 ORTHO05D005780 1.2e-07 60.8 114 36.8
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 1.2e-07 60.8 114 37.7
BcaC04g19108 Brassica carinata HOM05D000269 ORTHO05D005780 1.6e-07 60.5 114 34.2
A10p24720 Brassica napus HOM05D000269 ORTHO05D005780 1.6e-07 60.5 114 34.2
C09p63550 Brassica napus HOM05D000269 ORTHO05D005780 1.6e-07 60.5 114 34.2
BolC9t59199H Brassica oleracea HOM05D000269 ORTHO05D005780 1.6e-07 60.5 114 34.2
BraA10t44535Z Brassica rapa HOM05D000269 ORTHO05D005780 1.6e-07 60.5 114 34.2
Gohir.A05G351300 Gossypium hirsutum HOM05D000269 ORTHO05D005780 1.6e-07 60.5 135 32.6
GSVIVG01016641001 Vitis vinifera HOM05D000269 ORTHO05D005780 1.6e-07 60.5 114 36.8
THA.LOC104827306 Tarenaya hassleriana HOM05D000269 ORTHO05D005780 2.1e-07 60.1 114 34.2
Aa31LG3G130 Aethionema arabicum HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 33.3
A03p37660 Brassica napus HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 34.2
BolC3t16844H Brassica oleracea HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 34.2
BraA03t12919Z Brassica rapa HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 34.2
CDE07G0967 Ceratophyllum demersum HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 36.0
HanXRQChr09g0247651 Helianthus annuus HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 35.1
MBI14_g30583_MAGBIO Magnolia biondii HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 35.1
Sp3g10650 Schrenkiella parvula HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 33.3
SGA_v2.0_scaffold2G00993 Striga asiatica HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 36.0
THA.LOC104799373 Tarenaya hassleriana HOM05D000269 ORTHO05D005780 2.8e-07 59.7 114 34.2
Carub.0003s1185 Capsella rubella HOM05D000269 ORTHO05D005780 4.7e-07 58.9 114 33.3
TAR633G2825 Trochodendron aralioides HOM05D000269 ORTHO05D005780 4.7e-07 58.9 114 35.1
AT3G12520 Arabidopsis thaliana HOM05D000269 ORTHO05D005780 6.1e-07 58.5 114 33.3
Gohir.D04G061400 Gossypium hirsutum HOM05D000269 ORTHO05D005780 6.1e-07 58.5 113 33.6
Gorai.012G068500 Gossypium raimondii HOM05D000269 ORTHO05D005780 6.1e-07 58.5 113 33.6
Sp6g30480 Schrenkiella parvula HOM05D000269 ORTHO05D005780 6.1e-07 58.5 114 33.3
Thhalv10020199m.g Eutrema salsugineum HOM05D000269 ORTHO05D005780 8.0e-07 58.2 114 34.2
Ah.16g107590 Amaranthus hybridus HOM05D000269 ORTHO05D005780 1.0e-06 57.8 114 36.0
Hund22415 Selenicereus undatus HOM05D000269 ORTHO05D005780 1.0e-06 57.8 114 35.1
AL3G24150 Arabidopsis lyrata HOM05D000269 ORTHO05D005780 1.4e-06 57.4 114 32.5
BcaB01g05350 Brassica carinata HOM05D000269 ORTHO05D005780 1.4e-06 57.4 114 32.5
A03p06040 Brassica napus HOM05D000269 ORTHO05D005780 1.4e-06 57.4 114 32.5
C03p07090 Brassica napus HOM05D000269 ORTHO05D005780 1.4e-06 57.4 114 32.5
BolC3t13206H Brassica oleracea HOM05D000269 ORTHO05D005780 1.4e-06 57.4 114 32.5
BraA03t09942Z Brassica rapa HOM05D000269 ORTHO05D005780 1.4e-06 57.4 114 32.5
Os09g0240500 Oryza sativa ssp. japonica HOM05D000269 ORTHO05D005780 1.8e-06 57.0 114 36.0
Sed0024194 Sechium edule HOM05D000269 ORTHO05D005780 1.8e-06 57.0 114 35.1
ClCG09G020210 Citrullus lanatus HOM05D000269 ORTHO05D005780 3.0e-06 56.2 114 35.1
CsaV3_5G026240 Cucumis sativus L. HOM05D000269 ORTHO05D005780 3.0e-06 56.2 114 35.1
Medtr7g022870 Medicago truncatula HOM05D000269 ORTHO05D005780 3.0e-06 56.2 117 35.0
Sed0004589 Sechium edule HOM05D000269 ORTHO05D005780 3.0e-06 56.2 114 35.1
C03p45710 Brassica napus HOM05D000269 ORTHO05D005780 4.0e-06 55.8 114 32.5
MELO3C025473.2 Cucumis melo HOM05D000269 ORTHO05D005780 4.0e-06 55.8 114 35.1
Lsat_1_v5_gn_9_66481 Lactuca sativa HOM05D000269 ORTHO05D005780 4.0e-06 55.8 114 35.1
Zm00001eb095410 Zea mays HOM05D000269 ORTHO05D005780 4.0e-06 55.8 114 35.1
Aqoxy4G03050 Aquilegia oxysepala HOM05D000269 ORTHO05D005780 5.2e-06 55.5 114 35.1
SMO118G0323 Selaginella moellendorffii HOM05D000269 ORTHO05D005780 6.8e-06 55.1 114 34.2


User provided reference genes

Program Settings