Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 1.1e-164 584.7 806 100.0
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 2.4e-71 274.6 241 60.6
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 3.8e-61 240.7 242 54.5
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 2.1e-59 235.0 243 52.7
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 3.6e-59 234.2 243 54.3
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 4.6e-59 233.8 243 54.3
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 6.1e-59 233.4 248 54.0
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 1.3e-58 232.3 242 53.7
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 4.3e-57 227.3 250 49.2
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 1.6e-56 225.3 241 53.1
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 6.3e-56 223.4 237 52.3
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 8.5e-53 213.0 236 52.1
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 1.1e-52 212.6 241 48.5
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 1.4e-52 212.2 240 50.8
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.4e-52 212.2 240 50.8
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 3.2e-52 211.1 245 50.2
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 4.2e-52 210.7 240 52.1
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.2e-52 210.7 240 50.8
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 7.9e-51 206.5 245 50.2
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 1.8e-50 205.3 243 47.3
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 2.6e-49 201.4 240 48.8
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 4.4e-49 200.7 235 46.8
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 1.7e-48 198.7 241 49.4
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 1.7e-48 198.7 241 49.4
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 2.2e-48 198.4 240 49.2
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 2.8e-48 198.0 240 47.5
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 3.7e-48 197.6 249 47.4
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 4.8e-48 197.2 244 48.0
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 4.8e-48 197.2 232 47.0
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.8e-47 195.3 214 50.5
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 2.4e-47 194.9 240 47.1
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 3.1e-47 194.5 240 49.2
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 5.3e-47 193.7 242 47.1
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 3.4e-46 191.0 229 47.2
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 1.3e-45 189.1 243 45.3
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 2.2e-45 188.3 241 47.7
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 5.0e-45 187.2 232 45.7
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 2.5e-44 184.9 259 42.9
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 2.5e-44 184.9 232 47.0
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 3.2e-44 184.5 241 46.5
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 3.2e-44 184.5 241 46.5
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 3.2e-44 184.5 241 46.5
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 5.5e-44 183.7 236 47.5
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 9.4e-44 183.0 232 47.4
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 7.9e-43 179.9 243 44.4
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 2.0e-41 175.3 251 43.0
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.0e-41 175.3 222 46.4
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 7.4e-41 173.3 231 45.5
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 3.7e-40 171.0 228 42.5
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 1.4e-39 169.1 232 42.7
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 3.1e-39 167.9 237 44.3
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 4.5e-38 164.1 230 42.2
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 7.7e-38 163.3 234 44.9
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 3.8e-37 161.0 246 40.7
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.1e-36 159.5 227 40.5
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 1.5e-36 159.1 260 41.5
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.5e-36 159.1 139 59.7
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 1.5e-36 159.1 198 44.9
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.9e-36 158.7 247 43.3
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 2.5e-36 158.3 242 43.0
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 3.2e-36 157.9 228 39.9
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 3.2e-36 157.9 228 39.9
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 4.2e-36 157.5 238 43.3
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 5.5e-36 157.1 229 38.9
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 7.2e-36 156.8 250 40.8
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 9.4e-36 156.4 220 42.7
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 1.2e-35 156.0 238 42.4
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.0e-35 153.3 240 39.6
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-34 152.5 234 40.6
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 2.3e-34 151.8 237 41.8
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 3.0e-34 151.4 170 48.8
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-33 149.4 234 40.6
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 1.7e-32 145.6 145 56.6
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-31 142.5 239 41.4
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 3.8e-29 134.4 222 40.5
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 5.0e-29 134.0 176 48.3
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 7.2e-28 130.2 194 39.7
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 2.1e-27 128.6 169 43.2
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.4e-25 121.3 164 43.3
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 3.4e-25 121.3 245 36.7
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 3.7e-24 117.9 169 40.2
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.8e-24 117.5 156 41.0
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.8e-24 117.5 156 41.0
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 3.1e-23 114.8 181 40.3
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.1e-23 114.4 251 35.1
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 1.7e-21 109.0 85 56.5
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 6.5e-21 107.1 85 61.2
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.5e-20 105.1 253 32.4
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 5.5e-20 104.0 114 49.1
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 2.8e-19 101.7 86 54.7
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 6.8e-18 97.1 196 37.2
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 8.8e-18 96.7 194 37.6
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.0e-17 95.5 94 46.8
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 4.4e-17 94.4 135 41.5
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-16 92.4 87 49.4
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-16 92.4 221 36.2
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.8e-16 91.7 82 54.9
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 8.3e-16 90.1 79 51.9
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.8e-15 89.0 113 43.4
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 5.4e-15 87.4 68 64.7
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 5.9e-14 84.0 85 49.4
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 1.9e-12 79.0 89 44.9
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 4.3e-12 77.8 69 53.6
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 3.6e-11 74.7 90 43.3
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.0e-10 71.6 139 36.7
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 1.2e-09 69.7 242 26.4
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-09 69.3 113 37.2
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-09 69.3 113 37.2
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-09 69.3 97 41.2
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 2.6e-09 68.6 74 44.6
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 2.6e-09 68.6 74 44.6
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 4.4e-09 67.8 74 50.0
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 7.5e-09 67.0 182 25.8
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 7.5e-09 67.0 72 50.0
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-08 66.2 242 29.8
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-08 66.2 56 55.4
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 3.7e-08 64.7 157 26.1
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 4.9e-08 64.3 56 57.1
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 6.4e-08 63.9 184 28.3
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 8.3e-08 63.5 63 46.0
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.4e-07 62.0 191 26.7
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 3.2e-07 61.6 67 43.3
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.1e-07 61.2 190 26.3
FAN12G0771 Fragaria x ananassa HOM05D007063 ORTHO05D008822 5.4e-07 60.8 114 31.6
FAN07G2566 Fragaria x ananassa HOM05D007063 ORTHO05D008822 7.0e-07 60.5 114 31.6
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 7.0e-07 60.5 142 31.7
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 7.0e-07 60.5 184 26.6
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 9.2e-07 60.1 219 22.8
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 9.2e-07 60.1 70 45.7
PGR119G2491 Punica granatum HOM05D007063 ORTHO05D008822 1.2e-06 59.7 94 31.9
FvH4_4g35550 Fragaria vesca HOM05D007063 ORTHO05D008822 1.6e-06 59.3 114 30.7
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 1.6e-06 59.3 169 26.0
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 1.6e-06 59.3 106 30.2
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.6e-06 59.3 186 25.8
Cc11_g13730 Coffea canephora HOM05D007063 ORTHO05D008822 2.0e-06 58.9 114 31.6
FAN17G0779 Fragaria x ananassa HOM05D007063 ORTHO05D008822 2.0e-06 58.9 114 30.7
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.7e-06 58.5 106 33.0
CAN.G354.45 Capsicum annuum HOM05D007390 ORTHO05D009114 2.7e-06 58.5 102 32.4
Ca_25037_v3 Cicer arietinum L. HOM05D007063 ORTHO05D008822 2.7e-06 58.5 248 25.8
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.7e-06 58.5 142 31.0
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.5e-06 58.2 181 26.5
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 4.6e-06 57.8 190 28.4
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.6e-06 57.8 185 25.9
Psat4g129080 Pisum sativum HOM05D007063 ORTHO05D008822 5.9e-06 57.4 267 22.5
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.9e-06 57.4 106 33.0
Prupe.3G121700 Prunus persica HOM05D007063 ORTHO05D008822 7.8e-06 57.0 113 30.1
RcHm_v2.0_Chr4g0445191 Rosa chinensis HOM05D007063 ORTHO05D008822 7.8e-06 57.0 114 29.8


User provided reference genes

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