Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08834 Sapria himalayana HOM05D004788 ORTHO05D006465 1.7e-41 172.2 84 100.0
Manes.07G101300 Manihot esculenta HOM05D004788 ORTHO05D006465 3.6e-15 84.7 47 76.6
FvH4_7g19690 Fragaria vesca HOM05D004788 ORTHO05D006465 2.0e-13 79.0 57 59.6
FAN01G2387 Fragaria x ananassa HOM05D004788 ORTHO05D006465 2.0e-13 79.0 57 59.6
FAN03G1313 Fragaria x ananassa HOM05D004788 ORTHO05D006465 2.0e-13 79.0 57 59.6
FAN10G0780 Fragaria x ananassa HOM05D004788 ORTHO05D006465 2.0e-13 79.0 57 59.6
RcHm_v2.0_Chr1g0363521 Rosa chinensis HOM05D004788 ORTHO05D006465 3.4e-13 78.2 57 57.9
Atru.chr12.739 Acer truncatum HOM05D004788 ORTHO05D006465 5.8e-13 77.4 47 68.1
Ciclev10030655m.g Citrus clementina HOM05D004788 ORTHO05D006465 5.8e-13 77.4 51 66.7
FAN10G0980 Fragaria x ananassa HOM05D004788 ORTHO05D006465 5.8e-13 77.4 57 57.9
MD07G1175300 Malus domestica HOM05D004788 ORTHO05D006465 5.8e-13 77.4 57 59.6
ECA232G0614 Erigeron canadensis HOM05D004788 ORTHO05D006465 7.6e-13 77.0 57 59.6
Potri.010G221500 Populus trichocarpa HOM05D004788 ORTHO05D006465 7.6e-13 77.0 51 64.7
Duzib128G1556 Durio zibethinus HOM05D004788 ORTHO05D006465 1.7e-12 75.9 57 56.1
Cpa.g.sc53.70 Carica papaya HOM05D004788 ORTHO05D006465 2.2e-12 75.5 57 59.6
Dinv11781 Davidia involucrata HOM05D004788 ORTHO05D006465 2.9e-12 75.1 57 59.6
Sabra10G0171400 Salix brachista HOM05D004788 ORTHO05D006465 2.9e-12 75.1 51 64.7
CiPaw.02G174400 Carya illinoinensis HOM05D004788 ORTHO05D006465 3.8e-12 74.7 47 66.0
PSO170G4427 Papaver somniferum HOM05D004788 ORTHO05D006465 3.8e-12 74.7 57 54.4
Gohir.A10G206600 Gossypium hirsutum HOM05D004788 ORTHO05D006465 4.9e-12 74.3 57 56.1
Gohir.D10G214700 Gossypium hirsutum HOM05D004788 ORTHO05D006465 4.9e-12 74.3 57 56.1
Gorai.011G240300 Gossypium raimondii HOM05D004788 ORTHO05D006465 4.9e-12 74.3 57 56.1
Haze_05226 Corylus avellana HOM05D004788 ORTHO05D006465 6.4e-12 73.9 57 57.9
PSO063G3786 Papaver somniferum HOM05D004788 ORTHO05D006465 6.4e-12 73.9 57 52.6
Peaxi162Scf00747g00211 Petunia axillaris HOM05D004788 ORTHO05D006465 6.4e-12 73.9 57 56.1
GSVIVG01016291001 Vitis vinifera HOM05D004788 ORTHO05D006465 6.4e-12 73.9 50 62.0
Prupe.2G214500 Prunus persica HOM05D004788 ORTHO05D006465 8.4e-12 73.6 57 54.4
QL08p056120 Quercus lobata HOM05D004788 ORTHO05D006465 1.1e-11 73.2 47 63.8
Actinidia16628 Actinidia chinensis HOM05D004788 ORTHO05D006465 1.4e-11 72.8 46 65.2
Rhsim09G0110900 Rhododendron simsii HOM05D004788 ORTHO05D006465 1.4e-11 72.8 46 65.2
Thecc.10G072500 Theobroma cacao HOM05D004788 ORTHO05D006465 1.4e-11 72.8 57 54.4
COL.COLO4_23692 Corchorus olitorius HOM05D004788 ORTHO05D006465 1.9e-11 72.4 57 52.6
Sopen04g019320 Solanum pennellii HOM05D004788 ORTHO05D006465 2.4e-11 72.0 56 57.1
CSS0002233 Camellia sinensis var. sinensis HOM05D004788 ORTHO05D006465 3.2e-11 71.6 46 63.0
CSS0028648 Camellia sinensis var. sinensis HOM05D004788 ORTHO05D006465 3.2e-11 71.6 46 63.0
Lsat_1_v5_gn_4_181581 Lactuca sativa HOM05D004788 ORTHO05D006465 3.2e-11 71.6 47 63.8
TAR626G1809 Trochodendron aralioides HOM05D004788 ORTHO05D006465 4.1e-11 71.2 60 53.3
CAN.G4.2 Capsicum annuum HOM05D004788 ORTHO05D006465 5.4e-11 70.9 50 60.0
HanXRQChr08g0208591 Helianthus annuus HOM05D004788 ORTHO05D006465 5.4e-11 70.9 57 54.4
Solyc04g049360.3 Solanum lycopersicum HOM05D004788 ORTHO05D006465 7.1e-11 70.5 56 55.4
HPP92_010286 Vanilla planifolia HOM05D004788 ORTHO05D006465 7.1e-11 70.5 46 58.7
MD01G1109300 Malus domestica HOM05D004788 ORTHO05D006465 9.2e-11 70.1 47 59.6
Nitab4.5_0013243g0010 Nicotiana tabacum HOM05D004788 ORTHO05D006465 9.2e-11 70.1 47 61.7
Sc20g0001910 Simmondsia chinensis HOM05D004788 ORTHO05D006465 9.2e-11 70.1 56 53.6
ClCG05G020950 Citrullus lanatus HOM05D004788 ORTHO05D006465 1.6e-10 69.3 47 61.7
MELO3C012434.2 Cucumis melo HOM05D004788 ORTHO05D006465 2.1e-10 68.9 47 61.7
Nn8g40780 Nelumbo nucifera HOM05D004788 ORTHO05D006465 2.1e-10 68.9 46 60.9
Sed0008505 Sechium edule HOM05D004788 ORTHO05D006465 2.1e-10 68.9 47 61.7
TWI38G1549 Tripterygium wilfordii HOM05D004788 ORTHO05D006465 2.1e-10 68.9 51 56.9
Cc09_g02020 Coffea canephora HOM05D004788 ORTHO05D006465 2.7e-10 68.6 47 66.0
Hma1.2p1_0030F.1_g018320 Hydrangea macrophylla HOM05D004788 ORTHO05D006465 2.7e-10 68.6 46 60.9
Hma1.2p1_0030F.1_g018330 Hydrangea macrophylla HOM05D004788 ORTHO05D006465 2.7e-10 68.6 46 60.9
CANSAT25G2619 Cannabis sativa HOM05D004788 ORTHO05D006465 3.5e-10 68.2 49 59.2
CDE05G0857 Ceratophyllum demersum HOM05D004788 ORTHO05D006465 3.5e-10 68.2 46 58.7
Lj5g0009066 Lotus japonicus HOM05D004788 ORTHO05D006465 3.5e-10 68.2 57 56.1
Medtr1g095360 Medicago truncatula HOM05D004788 ORTHO05D006465 3.5e-10 68.2 45 64.4
Nitab4.5_0004657g0010 Nicotiana tabacum HOM05D004788 ORTHO05D006465 3.5e-10 68.2 47 59.6
Aqoxy7G02809 Aquilegia oxysepala HOM05D004788 ORTHO05D006465 4.6e-10 67.8 46 56.5
CsaV3_5G036360 Cucumis sativus L. HOM05D004788 ORTHO05D006465 4.6e-10 67.8 47 59.6
Oeu043947.4 Olea europaea HOM05D004788 ORTHO05D006465 4.6e-10 67.8 57 54.4
Eucgr.G02823 Eucalyptus grandis HOM05D004788 ORTHO05D006465 6.0e-10 67.4 47 59.6
Glyma.10G211600 Glycine max HOM05D004788 ORTHO05D006465 1.0e-09 66.6 57 54.4
GSVIVG01016290001 Vitis vinifera HOM05D004788 ORTHO05D006465 1.0e-09 66.6 49 59.2
Psat6g184480 Pisum sativum HOM05D004788 ORTHO05D006465 1.3e-09 66.2 45 62.2
Ca_10574_v3 Cicer arietinum L. HOM05D004788 ORTHO05D006465 2.3e-09 65.5 56 51.8
Ca_29597_v3 Cicer arietinum L. HOM05D004788 ORTHO05D006465 2.3e-09 65.5 56 51.8
Ah.12g052940 Amaranthus hybridus HOM05D004788 ORTHO05D006465 3.0e-09 65.1 56 50.0
ATR0626G067 Amborella trichopoda HOM05D004788 ORTHO05D006465 3.0e-09 65.1 46 58.7
Glyma.20G179400 Glycine max HOM05D004788 ORTHO05D006465 3.9e-09 64.7 57 52.6
Mapoly0009s0140 Marchantia polymorpha HOM05D004788 ORTHO05D006465 3.9e-09 64.7 55 49.1
Migut.F01772 Erythranthe guttata HOM05D004788 ORTHO05D006465 5.1e-09 64.3 45 60.0
SalBow5G2521 Salvia bowleyana HOM05D004788 ORTHO05D006465 8.7e-09 63.5 45 60.0
TPR.G1941 Trifolium pratense HOM05D004788 ORTHO05D006465 8.7e-09 63.5 45 60.0
PGR142G2437 Punica granatum HOM05D004788 ORTHO05D006465 1.1e-08 63.2 46 54.3
VMungo0720G1279 Vigna mungo HOM05D004788 ORTHO05D006465 1.5e-08 62.8 57 49.1
MBI13_g34045_MAGBIO Magnolia biondii HOM05D004788 ORTHO05D006465 1.9e-08 62.4 44 54.5
arahy.Tifrunner.gnm1.ann1.CYD8BJ Arachis hypogaea HOM05D004788 ORTHO05D006465 3.3e-08 61.6 46 58.7
arahy.Tifrunner.gnm1.ann1.L4RTFU Arachis hypogaea HOM05D004788 ORTHO05D006465 3.3e-08 61.6 46 58.7
arahy.Tifrunner.gnm1.ann1.M3N3P9 Arachis hypogaea HOM05D004788 ORTHO05D006465 3.3e-08 61.6 46 58.7
A04p21930 Brassica napus HOM05D004788 ORTHO05D006465 4.3e-08 61.2 46 52.2
BraA04t17760Z Brassica rapa HOM05D004788 ORTHO05D006465 4.3e-08 61.2 46 52.2
Phvul.007G094100 Phaseolus vulgaris HOM05D004788 ORTHO05D006465 4.3e-08 61.2 44 59.1
Thhalv10016200m.g Eutrema salsugineum HOM05D004788 ORTHO05D006465 5.6e-08 60.8 46 50.0
BolC4t27333H Brassica oleracea HOM05D004788 ORTHO05D006465 7.3e-08 60.5 46 52.2
Lalb_Chr02g0142131 Lupinus albus HOM05D004788 ORTHO05D006465 7.3e-08 60.5 46 54.3
Aa31LG5G7350 Aethionema arabicum HOM05D004788 ORTHO05D006465 9.6e-08 60.1 46 52.2
BcaC02g08128 Brassica carinata HOM05D004788 ORTHO05D006465 9.6e-08 60.1 46 52.2
C04p58070 Brassica napus HOM05D004788 ORTHO05D006465 9.6e-08 60.1 46 52.2
Sp4g11690 Schrenkiella parvula HOM05D004788 ORTHO05D006465 1.2e-07 59.7 46 50.0
AL4G23410 Arabidopsis lyrata HOM05D004788 ORTHO05D006465 1.6e-07 59.3 46 50.0
BcaB06g28261 Brassica carinata HOM05D004788 ORTHO05D006465 1.6e-07 59.3 46 50.0
SGA_v2.0_scaffold341G49365 Striga asiatica HOM05D004788 ORTHO05D006465 1.6e-07 59.3 45 55.6
AT2G28880 Arabidopsis thaliana HOM05D004788 ORTHO05D006465 6.2e-07 57.4 46 50.0
SEGI_34163 Sequoiadendron giganteum HOM05D004788 ORTHO05D006465 6.2e-07 57.4 54 50.0
BcaC02g11019 Brassica carinata HOM05D004788 ORTHO05D006465 1.1e-06 56.6 46 45.7
C04p22120 Brassica napus HOM05D004788 ORTHO05D006465 1.1e-06 56.6 46 45.7
BolC4t23734H Brassica oleracea HOM05D004788 ORTHO05D006465 1.1e-06 56.6 46 45.7
Carub.0004s0987 Capsella rubella HOM05D004788 ORTHO05D006465 1.4e-06 56.2 46 47.8
CARHR122030 Cardamine hirsuta HOM05D004788 ORTHO05D006465 1.4e-06 56.2 48 50.0
A07p19340 Brassica napus HOM05D004788 ORTHO05D006465 2.4e-06 55.5 44 45.5
AagrBONN_evm.TU.Sc2ySwM_323.2 Anthoceros agrestis HOM05D004788 ORTHO05D006465 4.0e-06 54.7 51 43.1
AagrBONN_evm.TU.Sc2ySwM_368.2427 Anthoceros agrestis HOM05D004788 ORTHO05D006465 4.0e-06 54.7 51 43.1
BcaB02g10208 Brassica carinata HOM05D004788 ORTHO05D006465 4.0e-06 54.7 44 45.5


User provided reference genes

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