Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 7.0e-201 703.7 358 100.0
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 3.8e-45 186.4 386 35.5
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.1e-44 184.9 398 35.4
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.4e-44 184.5 388 34.8
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.6e-43 181.0 372 36.6
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 9.6e-41 171.8 372 35.8
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 8.1e-40 168.7 372 35.2
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 4.0e-39 166.4 370 35.1
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.2e-38 164.9 404 32.7
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 5.8e-38 162.5 394 34.5
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 7.6e-38 162.2 400 32.8
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.7e-37 161.0 371 34.2
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 1.7e-37 161.0 433 30.9
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-37 161.0 355 33.2
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.7e-37 161.0 355 33.2
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 2.9e-37 160.2 380 33.4
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 3.8e-37 159.8 389 32.6
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 3.8e-37 159.8 372 32.8
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 8.4e-37 158.7 393 34.4
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 5.5e-36 156.0 444 30.4
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 5.5e-36 156.0 369 33.1
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 7.1e-36 155.6 361 33.0
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 9.3e-36 155.2 451 31.7
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 1.6e-35 154.5 439 32.6
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.1e-35 154.1 391 30.7
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 4.6e-35 152.9 451 31.5
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 7.9e-35 152.1 412 31.3
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 2.3e-34 150.6 355 33.0
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.9e-34 149.8 442 30.1
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.9e-34 149.8 366 33.1
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.1e-33 148.3 360 33.9
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.5e-33 147.1 385 33.2
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 2.5e-33 147.1 419 30.5
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.3e-32 144.8 484 29.8
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 1.6e-32 144.4 382 32.5
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 1.6e-32 144.4 372 31.7
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.1e-32 144.1 434 29.5
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 3.7e-32 143.3 409 31.1
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 3.7e-32 143.3 358 34.4
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 4.8e-32 142.9 391 32.0
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 6.2e-32 142.5 369 32.8
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.1e-31 141.7 353 33.7
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.1e-31 141.7 421 31.1
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.4e-31 141.4 365 32.9
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.4e-31 141.4 445 29.9
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.4e-31 141.4 389 32.1
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 2.4e-31 140.6 421 31.1
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 3.1e-31 140.2 457 29.1
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 3.1e-31 140.2 457 29.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 4.0e-31 139.8 451 31.0
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 4.0e-31 139.8 411 29.0
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 6.9e-31 139.0 481 29.5
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 2.0e-30 137.5 470 28.3
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.4e-30 136.7 368 30.2
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.4e-30 136.7 391 32.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 5.8e-30 136.0 447 28.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 7.6e-30 135.6 406 29.3
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 7.6e-30 135.6 454 30.0
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.0e-29 135.2 398 30.2
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.8e-29 133.3 430 29.3
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 4.9e-29 132.9 432 30.6
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 4.9e-29 132.9 408 30.6
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 6.5e-29 132.5 450 27.8
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 6.5e-29 132.5 400 31.5
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 8.4e-29 132.1 441 28.8
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.1e-28 131.7 371 31.8
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.4e-28 131.3 446 29.4
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.5e-28 130.6 362 31.5
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 4.2e-28 129.8 380 29.5
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 4.2e-28 129.8 498 28.5
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.5e-28 129.4 458 27.7
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.1e-28 129.0 445 28.5
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 7.1e-28 129.0 400 30.0
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 9.3e-28 128.6 439 30.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.3e-28 128.6 208 40.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.3e-28 128.6 208 40.4
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 9.3e-28 128.6 381 31.2
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 9.3e-28 128.6 425 28.0
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.2e-27 128.3 206 42.7
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.1e-27 127.5 532 26.7
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 2.1e-27 127.5 472 27.5
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 2.1e-27 127.5 390 29.7
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.7e-27 127.1 480 28.5
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.5e-27 126.7 505 28.9
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 3.5e-27 126.7 410 30.7
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 4.6e-27 126.3 405 30.9
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 4.6e-27 126.3 466 27.9
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.0e-26 125.2 383 28.7
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.8e-26 124.4 567 27.2
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 3.0e-26 123.6 427 28.6
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.1e-25 121.7 143 45.5
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.1e-25 121.7 428 29.4
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.9e-25 120.9 86 68.6
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 1.9e-25 120.9 400 30.8
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.9e-25 120.9 488 27.0
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 3.3e-25 120.2 360 29.2
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 4.3e-25 119.8 441 29.5
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 5.7e-25 119.4 388 30.4
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 5.7e-25 119.4 388 30.4
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 9.7e-25 118.6 106 55.7
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 9.7e-25 118.6 446 27.1
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.3e-24 118.2 407 29.2
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.2e-24 117.5 192 40.6
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 3.7e-24 116.7 464 26.7
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 6.3e-24 115.9 351 29.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.4e-23 114.8 114 50.9
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.4e-23 114.0 144 45.1
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.4e-23 114.0 140 45.7
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 2.4e-23 114.0 111 48.6
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 9.0e-23 112.1 413 28.3
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.5e-22 111.3 142 45.8
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 2.6e-22 110.5 90 57.8
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 5.9e-22 109.4 403 26.6
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 7.7e-22 109.0 88 59.1
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.0e-21 108.6 220 36.8
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.0e-21 108.6 181 37.6
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.7e-21 107.8 88 58.0
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.2e-21 107.5 150 41.3
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 2.2e-21 107.5 88 59.1
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 2.9e-21 107.1 198 38.9
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 3.8e-21 106.7 181 37.6
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.9e-20 104.4 189 37.6
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 1.9e-20 104.4 489 25.6
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 5.5e-20 102.8 316 30.1
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.4e-20 102.1 345 28.4
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.6e-19 100.1 105 51.4
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.0e-18 97.1 107 42.1
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.0e-18 97.1 106 47.2
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 3.1e-15 87.0 222 31.1
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 5.3e-15 86.3 358 25.1
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.2e-14 85.1 401 25.4
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 4.5e-14 83.2 100 43.0
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 7.7e-14 82.4 162 34.0
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.2e-13 80.9 96 41.7
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 2.5e-12 77.4 55 63.6
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.8e-08 63.9 114 32.5
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 6.3e-08 62.8 105 37.1
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.1e-07 62.0 91 45.1
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 1.1e-07 62.0 100 37.0
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.8e-07 61.2 37 73.0
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 7.0e-07 59.3 99 34.3
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 9.1e-07 58.9 54 44.4
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 1.2e-06 58.5 78 38.5
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 1.5e-06 58.2 87 41.4
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 2.0e-06 57.8 55 50.9
MCO07G413 Micromonas commoda HOM05D004938 ORTHO05D006035 2.0e-06 57.8 91 38.5


User provided reference genes

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