Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.1e-250 868.6 461 100.0
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 4.0e-100 369.4 482 51.2
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 7.4e-94 348.6 463 50.1
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 2.9e-90 336.7 413 51.1
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 8.5e-90 335.1 475 47.8
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.5e-89 333.6 477 47.2
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.2e-88 331.3 452 47.3
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.3e-87 327.8 474 44.9
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.3e-87 327.0 470 47.2
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.9e-87 326.2 479 47.8
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.7e-87 325.5 445 45.4
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.5e-86 323.6 422 47.6
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.3e-86 322.8 422 47.6
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 7.4e-86 322.0 478 44.4
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.4e-84 317.8 443 49.2
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.2e-83 314.7 432 47.2
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.4e-83 313.2 487 45.2
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 5.9e-83 312.4 478 45.0
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.9e-83 312.4 478 45.0
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.3e-82 311.2 458 48.0
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 3.8e-82 309.7 475 46.5
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 8.5e-82 308.5 451 45.5
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.5e-81 305.8 475 44.8
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.0e-79 301.6 474 45.1
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.8e-79 300.8 472 46.0
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.8e-79 300.8 422 46.2
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 3.0e-79 300.1 476 45.6
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 3.0e-79 300.1 474 43.5
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 3.9e-79 299.7 478 45.0
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 5.1e-79 299.3 412 50.0
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 5.1e-79 299.3 487 45.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 6.7e-79 298.9 478 44.1
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.0e-78 297.4 487 46.2
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 4.4e-78 296.2 474 45.4
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.4e-78 296.2 451 45.2
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 5.7e-78 295.8 474 44.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.8e-77 293.5 484 41.5
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.8e-77 293.5 474 43.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 3.7e-77 293.1 426 43.9
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 3.7e-77 293.1 472 45.1
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 4.8e-77 292.7 446 46.2
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.1e-76 291.6 452 44.7
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.1e-76 289.7 477 43.2
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.1e-76 289.7 487 43.1
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.1e-76 289.7 449 44.8
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.9e-76 288.9 487 43.1
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.2e-75 288.1 459 44.2
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 2.6e-75 287.0 479 42.2
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 3.4e-75 286.6 445 45.4
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.0e-74 285.0 429 44.1
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.9e-74 283.5 484 43.2
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.9e-74 283.5 479 43.8
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 6.5e-74 282.3 414 45.9
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 2.5e-73 280.4 418 44.3
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 9.4e-73 278.5 445 43.6
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 9.4e-73 278.5 477 43.8
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 2.1e-72 277.3 422 45.5
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.7e-72 276.9 526 40.3
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 6.1e-72 275.8 474 43.5
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 6.7e-71 272.3 431 42.5
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.0e-70 270.8 436 45.9
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.0e-70 270.8 426 44.1
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.0e-70 270.8 426 44.1
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 7.4e-70 268.9 396 46.2
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 9.7e-70 268.5 461 43.6
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 3.7e-69 266.5 464 42.9
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 6.3e-69 265.8 478 40.2
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.4e-68 264.6 498 42.4
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 3.1e-68 263.5 443 43.6
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.1e-68 263.1 444 43.2
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 5.3e-68 262.7 460 41.1
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 9.1e-68 261.9 428 41.1
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.0e-67 260.8 413 42.6
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 2.6e-67 260.4 460 42.0
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 5.9e-67 259.2 492 38.8
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.7e-67 258.8 477 41.5
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.7e-66 257.7 489 37.8
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.2e-66 257.3 434 42.9
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 3.8e-66 256.5 428 42.3
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 8.5e-66 255.4 519 39.7
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 8.5e-66 255.4 458 41.9
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.5e-65 254.6 477 41.3
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-65 254.2 480 40.4
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.5e-65 253.8 420 42.4
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.5e-65 253.8 484 40.3
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 5.5e-65 252.7 425 41.6
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 5.5e-65 252.7 428 40.9
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 5.5e-65 252.7 425 40.7
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 7.2e-65 252.3 487 40.5
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.4e-63 248.1 432 39.4
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.3e-63 247.3 458 40.2
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 3.0e-63 246.9 482 39.4
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.2e-63 246.1 480 39.6
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.0e-62 244.2 577 35.4
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 2.6e-62 243.8 441 39.5
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 5.7e-62 242.7 339 47.5
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 3.7e-61 240.0 440 41.4
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 4.8e-61 239.6 421 42.3
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.8e-61 239.6 459 40.5
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.2e-61 238.8 453 40.6
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.8e-60 237.7 419 41.8
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.0e-59 234.2 356 44.4
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.0e-59 234.2 383 41.5
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 2.7e-59 233.8 442 38.7
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.0e-58 231.9 519 36.4
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 2.9e-58 230.3 439 40.8
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 6.5e-58 229.2 445 40.4
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 6.5e-58 229.2 414 41.5
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.3e-55 220.7 361 43.5
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 5.2e-55 219.5 274 48.9
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 4.4e-54 216.5 456 37.5
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 1.8e-52 211.1 463 39.1
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 7.0e-52 209.1 423 38.3
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 9.1e-52 208.8 246 54.5
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.0e-51 207.6 489 34.2
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.7e-51 207.2 449 36.3
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 7.7e-51 205.7 449 37.6
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.2e-49 200.3 373 41.0
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.0e-46 191.0 445 37.1
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.0e-43 181.0 481 32.6
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 7.8e-43 179.1 433 35.1
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.7e-42 177.9 419 37.9
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 3.0e-39 167.2 357 36.7
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 5.2e-39 166.4 258 45.0
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.0e-34 152.1 401 34.7
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.1e-33 148.7 276 39.1
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 4.9e-29 133.3 430 28.4
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.4e-28 131.0 444 29.1
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 8.6e-26 122.5 188 42.0
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 2.1e-24 117.9 248 39.9
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.4e-22 110.2 268 34.3
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 7.1e-20 102.8 91 59.3
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 4.6e-19 100.1 75 69.3
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.6e-19 100.1 66 71.2
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.1e-17 95.5 173 41.6
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-17 94.7 93 52.7
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.5e-17 94.4 173 41.6
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.2e-16 92.0 429 26.8
SHI22850 Sapria himalayana HOM05D015319 ORTHO05D006067 1.6e-16 91.7 62 75.8
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 6.8e-15 86.3 184 34.2
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 8.9e-15 85.9 115 45.2
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 9.9e-14 82.4 152 41.4
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.4e-12 78.6 307 25.7
SHI22847 Sapria himalayana HOM05D017818 ORTHO05D365118 9.2e-12 75.9 60 75.0
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.2e-11 75.5 181 34.8
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 3.9e-10 70.5 477 26.4
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.9e-10 70.5 198 34.3
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 8.7e-10 69.3 201 31.3
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.4e-07 61.2 112 39.3
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 2.4e-07 61.2 134 36.6
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 3.1e-07 60.8 70 48.6
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.1e-07 60.8 198 32.8
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 9.0e-07 59.3 99 42.4
Zm00001eb411800 Zea mays HOM05D022290 ORTHO05D005169 2.0e-06 58.2 101 42.6
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 5.8e-06 56.6 390 24.4
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 7.6e-06 56.2 214 26.6
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 7.6e-06 56.2 93 41.9


User provided reference genes

Program Settings