Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.4e-145 519.6 265 100.0
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 3.5e-72 275.8 257 59.1
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 3.0e-71 272.7 254 57.5
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.5e-70 270.4 255 56.9
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.5e-70 270.4 255 56.9
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.5e-70 270.4 249 58.6
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 1.9e-70 270.0 254 56.7
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 3.3e-70 269.2 251 59.8
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.6e-69 266.9 251 55.8
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 2.1e-69 266.5 251 56.6
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 2.8e-69 266.2 249 57.8
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 4.7e-69 265.4 251 57.0
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 6.2e-69 265.0 249 58.6
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 8.1e-69 264.6 257 56.0
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 8.1e-69 264.6 252 55.6
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 1.1e-68 264.2 251 57.0
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.4e-68 263.8 251 56.2
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 6.8e-68 261.5 251 56.6
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 2.0e-67 260.0 251 54.2
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.0e-67 260.0 249 57.8
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 3.4e-67 259.2 252 55.6
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 3.4e-67 259.2 251 55.8
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 7.5e-67 258.1 256 53.9
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 9.9e-67 257.7 256 57.4
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.9e-66 256.1 249 58.2
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 3.7e-66 255.8 252 56.0
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.7e-66 255.8 252 54.8
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 6.4e-66 255.0 252 54.8
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 6.4e-66 255.0 251 54.6
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 8.3e-66 254.6 252 54.4
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 8.3e-66 254.6 252 53.2
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.1e-65 254.2 252 53.6
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.4e-65 253.8 252 56.0
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 1.9e-65 253.4 249 54.2
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 2.4e-65 253.1 251 55.8
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 2.4e-65 253.1 248 54.8
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.2e-65 252.7 260 55.0
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 3.2e-65 252.7 250 56.8
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 5.4e-65 251.9 250 55.2
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 7.1e-65 251.5 255 53.7
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.2e-64 250.8 243 56.8
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 2.1e-64 250.0 251 54.2
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 3.5e-64 249.2 255 54.1
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 3.5e-64 249.2 255 54.1
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 3.5e-64 249.2 241 56.4
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 6.0e-64 248.4 241 57.3
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 7.8e-64 248.1 248 54.0
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 7.8e-64 248.1 243 54.7
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.0e-63 247.7 248 54.0
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.0e-63 247.7 255 52.9
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 1.7e-63 246.9 251 54.2
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.7e-63 246.9 252 53.2
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.3e-63 246.5 252 52.4
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.3e-63 246.5 251 51.8
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 2.3e-63 246.5 258 51.6
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.3e-63 246.5 243 54.7
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 3.0e-63 246.1 252 52.4
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 3.9e-63 245.7 252 52.4
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 6.6e-63 245.0 254 52.8
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.1e-62 244.2 252 52.4
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.1e-62 244.2 250 53.6
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 1.9e-62 243.4 248 54.4
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 1.9e-62 243.4 252 51.6
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.9e-62 243.4 251 52.6
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 2.5e-62 243.0 248 54.8
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 2.5e-62 243.0 248 53.2
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 3.3e-62 242.7 250 52.4
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 5.6e-62 241.9 253 51.4
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 5.6e-62 241.9 248 52.4
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 5.6e-62 241.9 250 52.4
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.6e-61 240.4 248 52.4
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.8e-61 239.6 249 52.6
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 6.2e-61 238.4 248 54.8
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 6.2e-61 238.4 257 51.0
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 6.2e-61 238.4 252 52.0
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 8.1e-61 238.0 248 52.8
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 4.0e-60 235.7 251 51.8
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 4.0e-60 235.7 249 51.8
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 5.2e-60 235.3 242 54.5
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.5e-59 233.8 249 51.0
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.5e-59 233.8 243 55.1
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.3e-58 230.7 258 49.6
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 2.2e-58 229.9 252 50.0
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.1e-57 227.6 260 49.2
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 9.2e-57 224.6 239 52.3
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.6e-56 223.8 252 50.0
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.1e-56 223.4 285 44.6
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 3.5e-56 222.6 232 52.2
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.3e-55 220.7 253 50.2
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.7e-55 220.3 249 51.0
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 3.9e-55 219.2 251 50.2
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 3.9e-55 219.2 228 53.5
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 3.3e-54 216.1 291 43.6
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 4.3e-54 215.7 253 48.2
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 4.4e-51 205.7 243 47.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 2.9e-50 203.0 212 54.2
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 4.9e-50 202.2 211 53.6
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 8.4e-50 201.4 330 41.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 1.6e-48 197.2 243 47.7
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.7e-47 193.7 250 46.4
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 1.5e-46 190.7 249 44.2
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 9.6e-46 188.0 342 38.9
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.1e-45 186.8 196 52.0
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 8.1e-45 184.9 253 42.7
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 1.8e-44 183.7 223 47.5
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 1.2e-43 181.0 196 51.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 2.4e-41 173.3 197 50.3
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 2.7e-40 169.9 142 62.0
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 9.6e-38 161.4 128 60.2
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.3e-37 161.0 258 39.5
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.3e-37 161.0 240 42.1
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 4.8e-37 159.1 277 36.1
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 8.1e-37 158.3 142 52.1
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 3.4e-35 152.9 164 54.3
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.2e-33 146.4 247 38.9
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 7.1e-33 145.2 256 38.3
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.5e-30 137.5 254 36.6
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 2.5e-30 136.7 119 58.0
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 5.3e-28 129.0 161 47.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 3.7e-21 106.3 224 35.3
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.7e-13 80.9 78 52.6
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 2.2e-10 70.5 74 51.4
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.2e-09 66.2 72 54.2


User provided reference genes

Program Settings