Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 4.7e-45 184.1 90 100.0
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 4.9e-18 94.4 89 52.8
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 6.4e-18 94.0 74 62.2
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 8.4e-18 93.6 89 53.9
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.1e-17 93.2 89 52.8
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.4e-17 92.8 89 52.8
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 1.4e-17 92.8 89 52.8
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 1.9e-17 92.4 89 51.7
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.9e-17 92.4 89 51.7
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 1.9e-17 92.4 63 69.8
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 2.4e-17 92.0 63 68.3
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.4e-17 92.0 89 51.7
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.4e-17 92.0 89 51.7
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 2.4e-17 92.0 89 51.7
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.4e-17 92.0 89 52.8
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.4e-17 92.0 90 51.1
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 3.2e-17 91.7 90 51.1
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 3.2e-17 91.7 89 51.7
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 4.2e-17 91.3 63 68.3
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 4.2e-17 91.3 89 51.7
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 4.2e-17 91.3 89 52.8
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 4.2e-17 91.3 89 52.8
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 5.4e-17 90.9 92 53.3
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 5.4e-17 90.9 89 51.7
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 7.1e-17 90.5 89 51.7
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 9.2e-17 90.1 63 66.7
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 1.2e-16 89.7 89 48.3
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.2e-16 89.7 63 66.7
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 1.2e-16 89.7 63 66.7
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 1.2e-16 89.7 89 49.4
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.2e-16 89.7 92 48.9
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 1.6e-16 89.4 63 63.5
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.6e-16 89.4 89 51.7
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 1.6e-16 89.4 89 49.4
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.6e-16 89.4 89 49.4
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.6e-16 89.4 63 66.7
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.6e-16 89.4 90 52.2
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.6e-16 89.4 90 52.2
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 2.1e-16 89.0 63 63.5
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 2.1e-16 89.0 63 65.1
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 2.1e-16 89.0 89 49.4
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 2.7e-16 88.6 63 63.5
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 2.7e-16 88.6 89 48.3
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 2.7e-16 88.6 89 49.4
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 2.7e-16 88.6 63 65.1
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 3.5e-16 88.2 90 51.1
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 3.5e-16 88.2 63 63.5
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 3.5e-16 88.2 89 48.3
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 3.5e-16 88.2 63 65.1
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 3.5e-16 88.2 89 49.4
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 3.5e-16 88.2 61 75.4
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.5e-16 88.2 92 46.7
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 3.5e-16 88.2 92 50.0
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 4.6e-16 87.8 63 66.7
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 4.6e-16 87.8 63 66.7
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 4.6e-16 87.8 63 66.7
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 4.6e-16 87.8 92 46.7
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 4.6e-16 87.8 92 46.7
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 4.6e-16 87.8 63 66.7
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 6.0e-16 87.4 89 48.3
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 6.0e-16 87.4 89 49.4
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 6.0e-16 87.4 89 49.4
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 7.8e-16 87.0 89 48.3
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 7.8e-16 87.0 63 61.9
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 7.8e-16 87.0 63 65.1
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 7.8e-16 87.0 63 65.1
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 7.8e-16 87.0 63 65.1
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 7.8e-16 87.0 63 65.1
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 7.8e-16 87.0 92 50.0
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.0e-15 86.7 75 57.3
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 48.3
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 1.0e-15 86.7 89 49.4
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 1.3e-15 86.3 92 47.8
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 1.3e-15 86.3 92 47.8
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 1.3e-15 86.3 63 63.5
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.3e-15 86.3 63 61.9
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.3e-15 86.3 63 61.9
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.3e-15 86.3 92 50.0
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.3e-15 86.3 92 50.0
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.3e-15 86.3 63 63.5
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 1.7e-15 85.9 63 63.5
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 1.7e-15 85.9 63 63.5
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.7e-15 85.9 63 63.5
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.7e-15 85.9 89 48.3
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 1.7e-15 85.9 89 49.4
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 2.3e-15 85.5 63 63.5
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 2.3e-15 85.5 63 61.9
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 3.0e-15 85.1 89 47.2
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 3.0e-15 85.1 89 47.2
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 3.0e-15 85.1 63 61.9
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 3.0e-15 85.1 63 63.5
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 3.0e-15 85.1 63 61.9
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 3.0e-15 85.1 92 50.0
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 3.0e-15 85.1 92 50.0
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 3.0e-15 85.1 92 50.0
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 3.9e-15 84.7 63 61.9
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 3.9e-15 84.7 89 47.2
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 3.9e-15 84.7 63 63.5
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 3.9e-15 84.7 63 63.5
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 3.9e-15 84.7 89 47.2
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 3.9e-15 84.7 63 63.5
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 3.9e-15 84.7 63 63.5
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 3.9e-15 84.7 93 48.4
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 5.1e-15 84.3 63 63.5
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 5.1e-15 84.3 63 63.5
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 5.1e-15 84.3 63 60.3
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 5.1e-15 84.3 63 63.5
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 6.6e-15 84.0 63 60.3
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 6.6e-15 84.0 63 63.5
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 8.7e-15 83.6 89 46.1
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 8.7e-15 83.6 63 61.9
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.1e-14 83.2 63 58.7
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 1.1e-14 83.2 63 58.7
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 1.9e-14 82.4 63 60.3
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 3.3e-14 81.6 63 57.1
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 4.3e-14 81.3 63 57.1
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 9.6e-14 80.1 63 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 1.6e-13 79.3 63 52.4
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 1.6e-13 79.3 63 58.7
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 2.8e-13 78.6 63 57.1
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 1.8e-12 75.9 70 52.9
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 6.9e-12 73.9 77 48.1
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 1.2e-11 73.2 63 50.8
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 2.6e-11 72.0 63 54.0
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 4.4e-11 71.2 77 48.1
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 9.9e-11 70.1 46 69.6
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 9.9e-11 70.1 46 69.6
SHI15143 Sapria himalayana HOM05D004446 ORTHO05D005346 3.2e-09 65.1 37 86.5
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 5.4e-09 64.3 73 45.2
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 1.2e-08 63.2 63 44.4


User provided reference genes

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