Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 1.5e-129 467.6 496 100.0
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 4.7e-51 206.8 185 55.7
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 2.7e-46 191.0 177 53.1
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 3.5e-46 190.7 176 53.4
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 5.9e-46 189.9 187 51.9
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 2.3e-45 188.0 186 51.6
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 3.9e-45 187.2 206 47.1
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 3.9e-45 187.2 222 44.1
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 1.1e-44 185.7 170 52.9
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 1.1e-44 185.7 233 44.2
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 2.5e-44 184.5 168 53.6
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 3.6e-43 180.6 184 48.4
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 6.2e-43 179.9 224 43.8
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 1.8e-42 178.3 169 52.1
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.6e-41 174.5 168 50.6
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 4.9e-40 170.2 193 44.6
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 6.4e-40 169.9 147 55.1
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 8.3e-40 169.5 176 47.2
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 1.1e-39 169.1 188 46.3
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 4.1e-39 167.2 195 44.6
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 5.4e-39 166.8 179 48.0
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.7e-37 161.8 177 46.9
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 2.3e-37 161.4 171 48.0
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 5.0e-37 160.2 176 43.2
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.1e-36 159.1 176 43.8
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 1.9e-36 158.3 174 47.1
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.9e-36 158.3 191 44.0
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 2.5e-36 157.9 191 44.0
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 4.3e-36 157.1 170 46.5
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 5.6e-36 156.8 168 48.2
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 5.6e-36 156.8 168 48.2
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 7.3e-36 156.4 170 46.5
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 9.5e-36 156.0 191 42.9
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.2e-35 155.6 173 45.1
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 1.4e-34 152.1 172 45.3
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 1.8e-34 151.8 147 52.4
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 2.3e-34 151.4 170 45.3
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 2.3e-34 151.4 170 45.3
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 2.3e-34 151.4 170 45.3
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 4.0e-34 150.6 171 45.6
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 5.2e-34 150.2 159 47.8
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 8.9e-34 149.4 180 42.2
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.2e-33 149.1 169 43.8
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 2.0e-33 148.3 205 44.9
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 4.4e-33 147.1 185 44.9
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 4.4e-33 147.1 170 40.0
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 1.3e-32 145.6 162 47.5
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 1.7e-32 145.2 169 44.4
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 8.3e-32 142.9 191 40.8
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 8.3e-32 142.9 220 38.6
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 1.1e-31 142.5 170 42.4
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.9e-31 141.7 193 38.9
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 5.4e-31 140.2 188 40.4
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 7.1e-31 139.8 190 41.1
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 9.2e-31 139.4 166 44.0
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 2.1e-30 138.3 172 41.9
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 2.7e-30 137.9 220 39.1
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 7.8e-30 136.3 187 39.0
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 1.0e-29 136.0 168 43.5
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 2.3e-29 134.8 194 37.6
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 5.1e-29 133.7 187 41.7
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 1.5e-28 132.1 185 40.0
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 1.5e-28 132.1 170 41.8
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 1.9e-28 131.7 220 35.0
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 2.5e-28 131.3 166 42.8
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 2.5e-28 131.3 173 38.7
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 4.3e-28 130.6 201 37.8
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 7.3e-28 129.8 148 45.3
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.2e-27 129.0 191 36.6
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 2.1e-27 128.3 185 35.7
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 4.0e-26 124.0 174 36.8
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 4.0e-26 124.0 174 36.8
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 5.2e-26 123.6 183 37.7
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 5.2e-26 123.6 177 37.9
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 5.2e-26 123.6 159 41.5
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.5e-25 122.1 172 38.4
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 7.6e-25 119.8 193 35.2
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 9.9e-25 119.4 158 41.8
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.3e-24 119.0 172 39.5
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.2e-24 118.2 172 39.0
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 3.7e-24 117.5 218 34.4
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 3.2e-23 114.4 179 37.4
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 7.8e-22 109.8 174 33.3
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 1.7e-21 108.6 173 38.7
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.6e-19 102.1 155 38.7
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 6.2e-19 100.1 116 46.6
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 1.4e-18 99.0 226 31.4
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 3.1e-18 97.8 166 35.5
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 1.4e-15 89.0 151 35.1
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 7.1e-15 86.7 68 55.9
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 1.2e-14 85.9 158 32.9
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 1.3e-11 75.9 71 46.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.8e-11 73.9 154 30.5
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 6.2e-11 73.6 62 58.1
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 3.1e-10 71.2 150 30.7
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 6.9e-10 70.1 149 30.2
Migut.M01318 Erythranthe guttata HOM05D002890 ORTHO05D009847 9.0e-10 69.7 167 27.5
CANSAT56G2257 Cannabis sativa HOM05D002890 ORTHO05D009847 2.0e-09 68.6 167 26.9
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 2.2e-08 65.1 166 27.1
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 4.9e-08 63.9 52 50.0
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 8.4e-08 63.2 44 59.1
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 1.4e-07 62.4 37 70.3
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 2.4e-07 61.6 43 62.8
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 3.2e-07 61.2 54 46.3
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 3.2e-07 61.2 43 62.8
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 3.2e-07 61.2 43 62.8
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 3.2e-07 61.2 43 62.8
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 7.1e-07 60.1 160 24.4
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 7.1e-07 60.1 160 25.0
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 9.3e-07 59.7 162 25.3
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 1.6e-06 58.9 177 28.2
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 3.5e-06 57.8 43 60.5
PGR142G1175 Punica granatum HOM05D007212 ORTHO05D009094 6.0e-06 57.0 162 27.2


User provided reference genes

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