Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08126 Sapria himalayana HOM05D000079 ORTHO05D006933 1.1e-57 226.5 115 100.0
SHI08127 Sapria himalayana HOM05D000079 ORTHO05D006933 9.3e-30 133.7 99 69.7
Phvul.009G061200 Phaseolus vulgaris HOM05D000079 ORTHO05D006933 9.0e-17 90.5 71 63.4
Haze_22546 Corylus avellana HOM05D000079 ORTHO05D006933 2.0e-16 89.4 89 55.1
CSS0031595 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D006933 2.6e-16 89.0 86 55.8
Lalb_Chr08g0245951 Lupinus albus HOM05D000079 ORTHO05D006933 2.6e-16 89.0 82 57.3
Cfa013869 Carpinus fangiana HOM05D000079 ORTHO05D006933 3.4e-16 88.6 89 55.1
GSVIVG01009763001 Vitis vinifera HOM05D000079 ORTHO05D006933 3.4e-16 88.6 86 54.7
Nn5g29697 Nelumbo nucifera HOM05D000079 ORTHO05D006933 4.5e-16 88.2 89 56.2
vmacro21679 Vaccinium macrocarpon HOM05D000079 ORTHO05D006933 5.9e-16 87.8 93 54.8
VMungo1309G0022 Vigna mungo HOM05D000079 ORTHO05D006933 5.9e-16 87.8 71 60.6
Lj5g0010160 Lotus japonicus HOM05D000079 ORTHO05D006933 7.7e-16 87.4 91 51.6
QL02p009521 Quercus lobata HOM05D000079 ORTHO05D006933 7.7e-16 87.4 91 52.7
Rhsim06G0028900 Rhododendron simsii HOM05D000079 ORTHO05D006933 1.0e-15 87.0 80 60.0
Psat5g015800 Pisum sativum HOM05D000079 ORTHO05D006933 1.3e-15 86.7 79 58.2
CiPaw.07G157600 Carya illinoinensis HOM05D000079 ORTHO05D006933 1.7e-15 86.3 89 52.8
Medtr3g112180 Medicago truncatula HOM05D000079 ORTHO05D006933 1.7e-15 86.3 80 56.2
Thecc.08G032600 Theobroma cacao HOM05D000079 ORTHO05D006933 1.7e-15 86.3 86 55.8
TAR628G0508 Trochodendron aralioides HOM05D000079 ORTHO05D006933 1.7e-15 86.3 87 52.9
arahy.Tifrunner.gnm1.ann1.GSJ1T0 Arachis hypogaea HOM05D000079 ORTHO05D006933 2.9e-15 85.5 74 62.2
arahy.Tifrunner.gnm1.ann1.L9LUFQ Arachis hypogaea HOM05D000079 ORTHO05D006933 2.9e-15 85.5 74 62.2
Atru.chr13.416 Acer truncatum HOM05D000079 ORTHO05D006933 5.0e-15 84.7 81 54.3
DCAR_000388 Daucus carota HOM05D000079 ORTHO05D006933 5.0e-15 84.7 84 54.8
Duzib093G0541 Durio zibethinus HOM05D000079 ORTHO05D006933 5.0e-15 84.7 81 56.8
Manes.18G020700 Manihot esculenta HOM05D000079 ORTHO05D006933 6.5e-15 84.3 86 52.3
Duzib116G0788 Durio zibethinus HOM05D000079 ORTHO05D006933 8.5e-15 84.0 73 61.6
Glyma.06G029900 Glycine max HOM05D000079 ORTHO05D006933 8.5e-15 84.0 76 56.6
Nn1g05817 Nelumbo nucifera HOM05D000079 ORTHO05D006933 8.5e-15 84.0 89 51.7
Actinidia15359 Actinidia chinensis HOM05D000079 ORTHO05D006933 1.1e-14 83.6 89 52.8
Potri.002G032200 Populus trichocarpa HOM05D000079 ORTHO05D006933 1.1e-14 83.6 78 57.7
Potri.005G230900 Populus trichocarpa HOM05D000079 ORTHO05D006933 1.1e-14 83.6 78 57.7
MD15G1022800 Malus domestica HOM05D000079 ORTHO05D006933 1.9e-14 82.8 81 54.3
COL.COLO4_26251 Corchorus olitorius HOM05D000079 ORTHO05D006933 2.5e-14 82.4 95 51.6
TWI12G0527 Tripterygium wilfordii HOM05D000079 ORTHO05D006933 2.5e-14 82.4 89 50.6
HPP92_013421 Vanilla planifolia HOM05D000079 ORTHO05D006933 2.5e-14 82.4 74 55.4
Ciclev10003709m.g Citrus clementina HOM05D000079 ORTHO05D006933 3.2e-14 82.0 80 53.8
Gohir.A06G007000 Gossypium hirsutum HOM05D000079 ORTHO05D006933 3.2e-14 82.0 84 53.6
Aqoxy6G01180 Aquilegia oxysepala HOM05D000079 ORTHO05D006933 4.2e-14 81.6 89 51.7
Ca_02083_v3 Cicer arietinum L. HOM05D000079 ORTHO05D020150 4.2e-14 81.6 93 52.7
Manes.05G155400 Manihot esculenta HOM05D000079 ORTHO05D006933 4.2e-14 81.6 86 52.3
Sabra05G0178300 Salix brachista HOM05D000079 ORTHO05D006933 4.2e-14 81.6 78 56.4
TPR.G989 Trifolium pratense HOM05D000079 ORTHO05D006933 4.2e-14 81.6 96 52.1
HanXRQChr05g0151281 Helianthus annuus HOM05D000079 ORTHO05D006933 5.5e-14 81.3 90 50.0
MD08G1026100 Malus domestica HOM05D000079 ORTHO05D006933 5.5e-14 81.3 86 51.2
Aqoxy3G02272 Aquilegia oxysepala HOM05D000079 ORTHO05D006933 7.2e-14 80.9 74 59.5
Dinv39451 Davidia involucrata HOM05D000079 ORTHO05D006933 9.4e-14 80.5 91 53.8
Gohir.D06G003500 Gossypium hirsutum HOM05D000079 ORTHO05D006933 9.4e-14 80.5 84 52.4
Gorai.010G008100 Gossypium raimondii HOM05D000079 ORTHO05D006933 9.4e-14 80.5 84 52.4
Dinv04826 Davidia involucrata HOM05D000079 ORTHO05D006933 1.2e-13 80.1 86 53.5
Dinv31783 Davidia involucrata HOM05D000079 ORTHO05D006933 1.2e-13 80.1 86 53.5
Ca_02081_v3 Cicer arietinum L. HOM05D000079 ORTHO05D020150 1.6e-13 79.7 93 51.6
Ca_29782_v3 Cicer arietinum L. HOM05D000079 ORTHO05D006933 1.6e-13 79.7 93 51.6
Sed0025914 Sechium edule HOM05D000079 ORTHO05D006933 2.1e-13 79.3 74 54.1
Nitab4.5_0006379g0010 Nicotiana tabacum HOM05D000079 ORTHO05D006933 2.7e-13 79.0 92 50.0
Prupe.1G374800 Prunus persica HOM05D000079 ORTHO05D006933 2.7e-13 79.0 86 50.0
Nitab4.5_0001861g0020 Nicotiana tabacum HOM05D000079 ORTHO05D006933 3.6e-13 78.6 76 56.6
Sabra02G0026100 Salix brachista HOM05D000079 ORTHO05D006933 3.6e-13 78.6 80 55.0
SalBow7G4195 Salvia bowleyana HOM05D000079 ORTHO05D006933 3.6e-13 78.6 89 48.3
Lj4A35T44 Lonicera japonica HOM05D000079 ORTHO05D006933 7.9e-13 77.4 87 49.4
PGSC0003DMG400003747 Solanum tuberosum HOM05D000079 ORTHO05D006933 7.9e-13 77.4 72 56.9
Cpa.g.sc99.30 Carica papaya HOM05D000079 ORTHO05D006933 1.0e-12 77.0 86 50.0
MSTRG.1252 Avicennia marina HOM05D000079 ORTHO05D006933 1.8e-12 76.3 83 50.6
Sp1g23840 Schrenkiella parvula HOM05D000079 ORTHO05D006933 1.8e-12 76.3 77 51.9
EL10Ac1g00626 Beta vulgaris HOM05D000079 ORTHO05D006933 2.3e-12 75.9 68 55.9
ClCG08G014780 Citrullus lanatus HOM05D000079 ORTHO05D006933 3.0e-12 75.5 74 51.4
Peaxi162Scf00140g01012 Petunia axillaris HOM05D000079 ORTHO05D006933 3.0e-12 75.5 73 56.2
Solyc04g080720.4 Solanum lycopersicum HOM05D000079 ORTHO05D006933 3.0e-12 75.5 72 55.6
AT1G27620 Arabidopsis thaliana HOM05D000079 ORTHO05D006933 5.1e-12 74.7 83 48.2
AUR62034510 Chenopodium quinoa HOM05D000079 ORTHO05D020150 5.1e-12 74.7 101 43.6
HanXRQChr03g0069671 Helianthus annuus HOM05D000079 ORTHO05D020150 5.1e-12 74.7 90 46.7
CARHR134190 Cardamine hirsuta HOM05D000079 ORTHO05D006933 6.7e-12 74.3 82 48.8
AUR62014488 Chenopodium quinoa HOM05D000079 ORTHO05D006933 8.8e-12 73.9 103 42.7
Cc10_g02480 Coffea canephora HOM05D000079 ORTHO05D006933 1.1e-11 73.6 89 46.1
MELO3C010965.2 Cucumis melo HOM05D000079 ORTHO05D006933 1.1e-11 73.6 74 51.4
MBI10_g00748_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D006933 1.1e-11 73.6 89 46.1
Oeu030593.1 Olea europaea HOM05D000079 ORTHO05D006933 1.1e-11 73.6 89 47.2
CANSAT25G3258 Cannabis sativa HOM05D000079 ORTHO05D006933 1.5e-11 73.2 86 45.3
CDE06G1409 Ceratophyllum demersum HOM05D000079 ORTHO05D006933 1.5e-11 73.2 81 49.4
CsaV3_2G028970 Cucumis sativus L. HOM05D000079 ORTHO05D006933 2.0e-11 72.8 76 48.7
PSO675G4095 Papaver somniferum HOM05D000079 ORTHO05D006933 2.0e-11 72.8 89 50.6
BcaC01g01586 Brassica carinata HOM05D000079 ORTHO05D006933 2.5e-11 72.4 82 50.0
A08p26160 Brassica napus HOM05D000079 ORTHO05D006933 2.5e-11 72.4 82 50.0
BolC3t19692H Brassica oleracea HOM05D000079 ORTHO05D006933 2.5e-11 72.4 82 50.0
BraA08t34566Z Brassica rapa HOM05D000079 ORTHO05D006933 2.5e-11 72.4 82 50.0
Sc26g0003400 Simmondsia chinensis HOM05D000079 ORTHO05D006933 2.5e-11 72.4 84 47.6
AL1G41150 Arabidopsis lyrata HOM05D000079 ORTHO05D006933 3.3e-11 72.0 82 47.6
MSTRG.25197 Avicennia marina HOM05D000079 ORTHO05D006933 3.3e-11 72.0 82 46.3
C03p74390 Brassica napus HOM05D000079 ORTHO05D006933 3.3e-11 72.0 82 50.0
ATR0585G138 Amborella trichopoda HOM05D000079 ORTHO05D006933 4.3e-11 71.6 67 55.2
Thhalv10007633m.g Eutrema salsugineum HOM05D000079 ORTHO05D006933 4.3e-11 71.6 77 51.9
BcaC05g26757 Brassica carinata HOM05D000079 ORTHO05D006933 5.7e-11 71.2 77 49.4
RcHm_v2.0_Chr6g0301621 Rosa chinensis HOM05D000079 ORTHO05D006933 5.7e-11 71.2 86 46.5
A09p38430 Brassica napus HOM05D000079 ORTHO05D006933 7.4e-11 70.9 77 50.6
BraA09t39352Z Brassica rapa HOM05D000079 ORTHO05D006933 7.4e-11 70.9 77 50.6
Migut.C00764 Erythranthe guttata HOM05D000079 ORTHO05D006933 7.4e-11 70.9 76 47.4
FAN15G3710 Fragaria x ananassa HOM05D000079 ORTHO05D006933 9.7e-11 70.5 86 46.5
FAN20G3213 Fragaria x ananassa HOM05D000079 ORTHO05D006933 9.7e-11 70.5 86 46.5
FAN26G2717 Fragaria x ananassa HOM05D000079 ORTHO05D006933 9.7e-11 70.5 86 46.5
FAN27G1647 Fragaria x ananassa HOM05D000079 ORTHO05D006933 9.7e-11 70.5 86 46.5
Ca_01385_v3 Cicer arietinum L. HOM05D000079 ORTHO05D006933 1.3e-10 70.1 73 50.7
Hund26900 Selenicereus undatus HOM05D000079 ORTHO05D006933 1.3e-10 70.1 71 53.5
THA.LOC104822832 Tarenaya hassleriana HOM05D000079 ORTHO05D006933 1.7e-10 69.7 79 49.4
C05p26250 Brassica napus HOM05D000079 ORTHO05D020150 2.2e-10 69.3 77 49.4
FvH4_2g39380 Fragaria vesca HOM05D000079 ORTHO05D006933 2.2e-10 69.3 86 45.3
Lsat_1_v5_gn_5_26801 Lactuca sativa HOM05D000079 ORTHO05D006933 3.7e-10 68.6 92 44.6
PSO541G2710 Papaver somniferum HOM05D000079 ORTHO05D006933 3.7e-10 68.6 77 51.9
PGR083G0166 Punica granatum HOM05D000079 ORTHO05D006933 3.7e-10 68.6 96 43.8
Carub.0001s2613 Capsella rubella HOM05D000079 ORTHO05D006933 4.8e-10 68.2 72 51.4
Ca_01386_v3 Cicer arietinum L. HOM05D000079 ORTHO05D006933 6.3e-10 67.8 73 46.6
SGA_v2.0_scaffold201G41373 Striga asiatica HOM05D000079 ORTHO05D006933 1.8e-09 66.2 83 45.8
PGR031G1553 Punica granatum HOM05D000079 ORTHO05D006933 2.4e-09 65.9 101 43.6
Os01g0104900 Oryza sativa ssp. japonica HOM05D000079 ORTHO05D006933 3.1e-09 65.5 70 50.0
CsaV3_3G045460 Cucumis sativus L. HOM05D000079 ORTHO05D006933 4.1e-09 65.1 68 51.5
Eucgr.F01597 Eucalyptus grandis HOM05D000079 ORTHO05D006933 4.1e-09 65.1 63 54.0
Aa31sc143G20 Aethionema arabicum HOM05D000079 ORTHO05D006933 6.9e-09 64.3 79 43.0
TPR.G34565 Trifolium pratense HOM05D000079 ORTHO05D006933 1.2e-08 63.5 87 40.2
Ca_11175_v3 Cicer arietinum L. HOM05D000356 ORTHO05D000265 2.0e-08 62.8 65 50.8
Zm00001eb126880 Zea mays HOM05D000079 ORTHO05D006933 4.5e-08 61.6 70 48.6
Ca_27199_v3 Cicer arietinum L. HOM05D000356 ORTHO05D000265 7.7e-08 60.8 73 47.9
ClCG05G018720 Citrullus lanatus HOM05D000079 ORTHO05D006933 1.0e-07 60.5 68 51.5
Os01g0382200 Oryza sativa ssp. japonica HOM05D000079 ORTHO05D006933 1.0e-07 60.5 55 58.2


User provided reference genes

Program Settings