Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 4.4e-56 221.1 113 100.0
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 1.3e-20 103.2 113 46.9
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 6.6e-20 100.9 112 42.9
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 4.7e-18 94.7 113 46.0
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.1e-17 93.6 113 45.1
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.1e-17 93.6 113 45.1
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 2.3e-17 92.4 112 43.8
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.7e-15 86.3 113 42.5
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 7.8e-13 77.4 108 39.8
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 1.3e-12 76.6 122 38.5
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 1.3e-12 76.6 117 40.2
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 1.7e-12 76.3 110 41.8
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 8.6e-12 73.9 112 36.6
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 1.5e-11 73.2 110 40.0
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 1.5e-11 73.2 110 40.0
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 1.5e-11 73.2 110 40.0
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 1.5e-11 73.2 110 40.0
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 1.9e-11 72.8 110 40.0
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 2.5e-11 72.4 110 37.3
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 3.3e-11 72.0 110 40.0
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 3.3e-11 72.0 110 40.0
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 3.3e-11 72.0 110 40.0
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 5.6e-11 71.2 109 41.3
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 7.3e-11 70.9 109 41.3
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 7.3e-11 70.9 109 41.3
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 9.5e-11 70.5 110 37.3
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 9.5e-11 70.5 110 37.3
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 9.5e-11 70.5 110 39.1
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 1.6e-10 69.7 108 36.1
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 3.6e-10 68.6 105 41.0
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 3.6e-10 68.6 105 41.0
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.6e-10 68.6 113 37.2
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.4e-09 66.6 114 36.0
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 1.4e-09 66.6 112 35.7
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.8e-09 66.2 107 35.5
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 3.1e-09 65.5 111 36.0
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 4.0e-09 65.1 110 37.3
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 5.2e-09 64.7 107 33.6
BcaB08g36562 Brassica carinata HOM05D003064 ORTHO05D001733 6.8e-09 64.3 113 34.5
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 6.8e-09 64.3 113 34.5
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 6.8e-09 64.3 110 36.4
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 6.8e-09 64.3 109 34.9
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 6.8e-09 64.3 107 31.8
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 8.9e-09 63.9 109 34.9
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.2e-08 63.5 108 32.4
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.2e-08 63.5 109 34.9
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.5e-08 63.2 111 34.2
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 1.5e-08 63.2 113 33.6
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.0e-08 62.8 109 34.9
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 2.0e-08 62.8 111 33.3
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 3.4e-08 62.0 117 32.5
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 3.4e-08 62.0 112 34.8
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 4.4e-08 61.6 111 33.3
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 4.4e-08 61.6 106 33.0
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 4.4e-08 61.6 109 34.9
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 4.4e-08 61.6 112 33.9
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 5.8e-08 61.2 112 34.8
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 5.8e-08 61.2 109 35.8
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 5.8e-08 61.2 107 33.6
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 5.8e-08 61.2 112 31.2
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 7.5e-08 60.8 115 36.5
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 7.5e-08 60.8 114 36.0
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 7.5e-08 60.8 111 33.3
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 9.9e-08 60.5 112 34.8
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 1.3e-07 60.1 109 33.0
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 1.3e-07 60.1 113 32.7
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 1.3e-07 60.1 109 33.0
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 1.3e-07 60.1 109 33.0
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 1.3e-07 60.1 113 32.7
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 1.3e-07 60.1 109 34.9
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 1.3e-07 60.1 114 29.8
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 1.7e-07 59.7 113 32.7
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 1.7e-07 59.7 113 32.7
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 1.7e-07 59.7 109 33.0
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 2.2e-07 59.3 117 31.6
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 2.9e-07 58.9 109 32.1
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 2.9e-07 58.9 113 31.9
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 2.9e-07 58.9 107 29.9
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.9e-07 58.9 113 33.6
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 3.7e-07 58.5 109 33.9
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 3.7e-07 58.5 109 32.1
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 4.9e-07 58.2 113 31.9
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 4.9e-07 58.2 113 31.9
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 4.9e-07 58.2 113 31.9
CARHR192990 Cardamine hirsuta HOM05D003064 ORTHO05D001733 4.9e-07 58.2 113 34.5
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 4.9e-07 58.2 112 33.0
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 4.9e-07 58.2 105 35.2
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 6.4e-07 57.8 106 32.1
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 8.3e-07 57.4 109 32.1
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 8.3e-07 57.4 113 31.0
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 8.3e-07 57.4 108 32.4
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 8.3e-07 57.4 109 33.9
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 8.3e-07 57.4 109 33.0
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 1.1e-06 57.0 109 33.0
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 1.1e-06 57.0 111 30.6
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 1.4e-06 56.6 114 37.7
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.4e-06 56.6 109 31.2
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.4e-06 56.6 109 31.2
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.4e-06 56.6 109 31.2
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 1.4e-06 56.6 105 33.3
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 1.4e-06 56.6 119 32.8
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.4e-06 56.6 109 30.3
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 1.9e-06 56.2 112 33.9
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 1.9e-06 56.2 111 28.8
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 1.9e-06 56.2 109 33.0
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 2.4e-06 55.8 109 33.0
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 2.4e-06 55.8 114 29.8
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 3.2e-06 55.5 122 31.1
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 3.2e-06 55.5 104 30.8
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 3.2e-06 55.5 122 31.1
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 4.1e-06 55.1 108 29.6
QL01p010327 Quercus lobata HOM05D003064 ORTHO05D001733 4.1e-06 55.1 104 29.8
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 4.1e-06 55.1 108 34.3
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 5.4e-06 54.7 100 31.0
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 5.4e-06 54.7 116 31.0
Thhalv10015028m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 7.1e-06 54.3 109 33.0
Ciclev10017191m.g Citrus clementina HOM05D003064 ORTHO05D001733 9.2e-06 53.9 104 31.7
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 9.2e-06 53.9 109 31.2


User provided reference genes

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