Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 2.4e-245 851.7 419 100.0
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 8.3e-153 544.3 420 62.4
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 2.4e-152 542.7 423 62.2
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.3e-150 537.0 432 60.4
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.9e-149 533.1 419 61.8
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 3.6e-148 528.9 431 61.0
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.1e-147 527.3 428 59.8
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 5.2e-147 525.0 420 61.0
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 5.2e-147 525.0 427 61.6
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 3.4e-146 522.3 430 59.8
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 1.3e-145 520.4 432 59.0
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 1.3e-145 520.4 425 61.4
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.2e-145 519.6 422 60.7
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 2.2e-145 519.6 432 58.8
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 2.2e-145 519.6 418 60.5
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 2.2e-145 519.6 415 61.4
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 2.2e-145 519.6 422 61.1
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 6.4e-145 518.1 418 61.7
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 6.4e-145 518.1 415 60.7
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 6.4e-145 518.1 426 61.0
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 8.4e-145 517.7 415 61.2
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.4e-144 516.9 415 61.0
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 3.2e-144 515.8 407 60.2
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.4e-144 515.0 415 60.2
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.2e-143 513.8 409 59.7
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 1.6e-143 513.5 409 61.4
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 6.0e-143 511.5 412 59.5
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 7.8e-143 511.1 424 58.0
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 7.8e-143 511.1 401 61.8
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.0e-142 510.8 417 57.8
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.7e-142 510.0 426 57.7
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.3e-142 509.6 427 59.7
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 3.0e-142 509.2 427 57.6
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.0e-142 509.2 415 59.5
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 3.0e-142 509.2 415 59.3
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 3.9e-142 508.8 410 59.8
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 5.1e-142 508.4 416 60.6
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 6.6e-142 508.1 395 60.8
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 1.9e-141 506.5 407 59.5
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 4.3e-141 505.4 407 59.5
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.3e-141 505.4 404 59.4
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 4.3e-141 505.4 437 56.1
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 7.3e-141 504.6 417 60.7
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 1.2e-140 503.8 408 60.3
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.2e-140 503.8 414 59.4
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 1.2e-140 503.8 413 58.6
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.2e-140 503.8 434 56.9
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 1.2e-140 503.8 434 58.5
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 1.2e-140 503.8 415 57.3
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 2.1e-140 503.1 406 59.1
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 2.8e-140 502.7 420 58.1
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 4.7e-140 501.9 410 60.5
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 6.2e-140 501.5 433 56.4
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 6.2e-140 501.5 396 60.9
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 8.1e-140 501.1 450 54.2
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 8.1e-140 501.1 432 57.9
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 1.4e-139 500.4 410 58.3
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 1.4e-139 500.4 412 58.0
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 9.0e-139 497.7 411 58.6
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 1.2e-138 497.3 401 59.9
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.5e-138 496.9 429 55.9
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 2.0e-138 496.5 438 56.8
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 2.0e-138 496.5 433 56.8
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 2.6e-138 496.1 350 65.7
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.4e-138 495.7 415 58.3
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 7.6e-138 494.6 427 55.5
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 2.9e-137 492.7 422 57.3
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 3.8e-137 492.3 408 59.1
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 8.4e-137 491.1 357 61.9
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.1e-136 490.7 407 57.5
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 2.4e-136 489.6 432 56.7
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 3.2e-136 489.2 349 62.2
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 5.4e-136 488.4 434 56.2
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 7.1e-136 488.0 377 61.8
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.2e-135 487.3 357 63.6
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 1.6e-135 486.9 430 56.3
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 2.1e-135 486.5 407 55.3
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 3.5e-135 485.7 410 58.3
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 7.8e-135 484.6 414 58.5
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.7e-134 483.4 408 58.3
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 2.3e-134 483.0 347 65.7
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 2.3e-134 483.0 408 58.1
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 3.0e-134 482.6 424 57.5
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 3.0e-134 482.6 424 57.5
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 3.0e-134 482.6 424 57.5
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 3.9e-134 482.3 426 56.1
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 6.6e-134 481.5 408 57.1
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 8.7e-134 481.1 424 57.3
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 8.7e-134 481.1 414 58.5
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 1.9e-133 479.9 424 56.8
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 2.5e-133 479.6 416 57.5
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 3.3e-133 479.2 414 57.2
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 4.3e-133 478.8 428 57.0
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 5.6e-133 478.4 411 58.4
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 5.6e-133 478.4 411 58.4
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 5.6e-133 478.4 411 58.4
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 4.8e-132 475.3 424 56.1
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 6.2e-132 474.9 341 63.3
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 8.1e-132 474.6 345 63.5
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 1.1e-131 474.2 411 56.0
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 1.1e-131 474.2 400 57.8
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 1.4e-131 473.8 402 56.2
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 4.0e-131 472.2 422 57.1
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 4.0e-131 472.2 401 57.4
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 1.5e-130 470.3 349 61.6
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 2.6e-130 469.5 373 59.2
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 9.9e-130 467.6 415 55.4
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 2.9e-129 466.1 426 54.5
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 8.4e-129 464.5 402 56.2
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 1.9e-128 463.4 392 57.4
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 7.1e-128 461.5 413 53.8
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 2.7e-127 459.5 345 62.0
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 4.6e-127 458.8 307 66.1
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 4.6e-127 458.8 436 53.2
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 6.0e-127 458.4 351 61.0
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-126 457.2 408 57.8
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 1.6e-124 450.3 414 55.6
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.1e-124 449.9 348 59.5
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 6.2e-124 448.4 433 54.3
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 2.4e-123 446.4 415 55.9
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 5.8e-122 441.8 370 58.6
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-121 440.3 424 53.8
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 2.2e-121 439.9 427 53.2
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 2.2e-121 439.9 343 60.1
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 3.8e-121 439.1 332 60.5
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 4.9e-121 438.7 423 54.8
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 3.2e-120 436.0 344 58.1
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 4.2e-120 435.6 414 55.1
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 9.3e-120 434.5 423 53.0
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 7.9e-119 431.4 429 52.2
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.8e-118 430.3 422 53.1
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 2.3e-118 429.9 408 55.6
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 5.1e-118 428.7 344 58.7
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 1.2e-114 417.5 290 64.5
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.9e-113 412.9 437 50.3
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.0e-110 404.4 403 49.9
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 1.3e-110 404.1 452 48.7
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.0e-110 402.9 403 49.9
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.6e-108 397.1 291 62.9
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 6.9e-107 391.7 341 56.3
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 5.5e-104 382.1 338 54.7
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.4e-99 367.5 339 52.8
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 1.2e-98 364.4 307 57.0
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 1.3e-97 360.9 341 50.4
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 2.2e-97 360.1 251 65.7
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 1.4e-96 357.5 340 49.1
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 7.2e-96 355.1 340 51.2
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 7.2e-96 355.1 252 63.1
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 1.6e-95 354.0 436 44.7
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 3.6e-95 352.8 362 47.8
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 7.4e-93 345.1 426 42.3
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 6.3e-92 342.0 343 49.6
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 3.1e-91 339.7 341 49.0
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 1.4e-88 330.9 279 62.0
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 3.6e-87 326.2 241 61.4
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.1e-85 321.2 348 46.8
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 1.2e-82 311.2 240 60.0
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 1.6e-82 310.8 385 45.5
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.7e-79 300.1 343 45.2
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.3e-78 297.0 341 44.3
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 4.0e-78 296.2 298 49.3
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 2.2e-76 290.4 236 54.7
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.8e-75 287.3 346 43.9
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.6e-74 284.3 343 42.0
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 2.9e-73 280.0 236 52.1
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.9e-73 280.0 348 42.2
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.9e-73 280.0 346 40.5
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 3.2e-72 276.6 240 52.1
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.6e-69 266.9 349 39.5
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 9.2e-59 231.9 354 37.3
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.8e-38 164.5 152 55.9
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 6.4e-36 156.0 443 27.3
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 1.3e-33 148.3 154 48.1
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 6.9e-22 109.4 84 57.1
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 5.8e-21 106.3 114 43.9
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.3e-17 94.4 119 41.2
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 3.6e-15 87.0 120 47.5
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 8.1e-15 85.9 120 36.7
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 6.9e-14 82.8 87 49.4
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 3.4e-13 80.5 76 43.4
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 2.1e-07 61.2 38 73.7


User provided reference genes

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