Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07965 Sapria himalayana HOM05D001842 ORTHO05D001849 5.4e-110 401.0 200 100.0
Manes.18G003700 Manihot esculenta HOM05D001842 ORTHO05D001849 9.8e-27 124.4 154 50.6
TWI56G1388 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 1.3e-26 124.0 154 48.1
Manes.05G124400 Manihot esculenta HOM05D001842 ORTHO05D001849 1.4e-25 120.6 151 51.0
Sabra02G0006400 Salix brachista HOM05D001842 ORTHO05D001849 1.6e-24 117.1 144 52.1
Dinv31963 Davidia involucrata HOM05D001842 ORTHO05D001849 2.0e-24 116.7 157 47.8
Eucgr.F01786 Eucalyptus grandis HOM05D001842 ORTHO05D001849 2.7e-24 116.3 141 49.6
Potri.002G008600 Populus trichocarpa HOM05D001842 ORTHO05D001849 2.7e-24 116.3 144 52.1
Nn6g31683 Nelumbo nucifera HOM05D001842 ORTHO05D001849 6.0e-24 115.2 149 50.3
Hma1.2p1_0612F.1_g188880 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 3.0e-23 112.8 193 40.9
AUR62042905 Chenopodium quinoa HOM05D001842 ORTHO05D001849 1.6e-21 107.1 155 45.8
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 1.6e-21 107.1 150 49.3
EL10Ac1g01913 Beta vulgaris HOM05D001842 ORTHO05D001849 3.6e-21 105.9 155 46.5
Hma1.2p1_0699F.1_g205520 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 4.7e-21 105.5 157 45.9
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 4.7e-21 105.5 155 45.2
FAN08G1553 Fragaria x ananassa HOM05D001842 ORTHO05D001849 8.1e-21 104.8 186 38.7
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 1.8e-20 103.6 157 44.6
AUR62035136 Chenopodium quinoa HOM05D001842 ORTHO05D001849 2.3e-20 103.2 155 45.2
ClCG11G018830 Citrullus lanatus HOM05D001842 ORTHO05D001849 5.2e-20 102.1 208 37.5
Sc02g0009180 Simmondsia chinensis HOM05D001842 ORTHO05D001849 5.2e-20 102.1 153 45.8
Ah.00g001000 Amaranthus hybridus HOM05D001842 ORTHO05D001849 8.9e-20 101.3 155 44.5
CAN.G311.131 Capsicum annuum HOM05D001842 ORTHO05D001849 1.5e-19 100.5 156 42.9
MBI08_g37961_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 1.5e-19 100.5 150 46.0
Lj4C8G7 Lonicera japonica HOM05D001842 ORTHO05D001849 4.4e-19 99.0 157 42.0
FvH4_5g25580 Fragaria vesca HOM05D001842 ORTHO05D001849 5.8e-19 98.6 186 37.6
Cc10_g00500 Coffea canephora HOM05D001842 ORTHO05D001849 1.3e-18 97.4 157 43.9
FAN04G2289 Fragaria x ananassa HOM05D001842 ORTHO05D001849 3.7e-18 95.9 186 37.1
MBI05_g33293_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 4.9e-18 95.5 147 43.5
PGR083G1188 Punica granatum HOM05D001842 ORTHO05D001849 6.4e-18 95.1 162 40.7
CANSAT11G0401 Cannabis sativa HOM05D001842 ORTHO05D001849 8.3e-18 94.7 176 38.6
MELO3C017039.2 Cucumis melo HOM05D001842 ORTHO05D001849 1.4e-17 94.0 227 34.4
Actinidia28609 Actinidia chinensis HOM05D001842 ORTHO05D001849 1.9e-17 93.6 167 43.1
Actinidia37913 Actinidia chinensis HOM05D001842 ORTHO05D001849 2.4e-17 93.2 167 40.7
GSVIVG01023872001 Vitis vinifera HOM05D001842 ORTHO05D001849 3.2e-17 92.8 153 43.8
Cpa.g.sc26.167 Carica papaya HOM05D001842 ORTHO05D001849 4.1e-17 92.4 215 33.5
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 4.1e-17 92.4 148 42.6
CsaV3_4G037410 Cucumis sativus L. HOM05D001842 ORTHO05D001849 5.4e-17 92.0 227 33.0
Hund05092 Selenicereus undatus HOM05D001842 ORTHO05D001849 5.4e-17 92.0 131 47.3
MD06G1007400 Malus domestica HOM05D001842 ORTHO05D001849 7.1e-17 91.7 201 35.8
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 1.6e-16 90.5 143 44.1
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 2.1e-16 90.1 151 46.4
Gohir.A01G103800 Gossypium hirsutum HOM05D001842 ORTHO05D001849 2.7e-16 89.7 194 37.1
Gohir.D01G089100 Gossypium hirsutum HOM05D001842 ORTHO05D001849 2.7e-16 89.7 194 37.1
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 4.6e-16 89.0 152 41.4
Lj4A809G47 Lonicera japonica HOM05D001842 ORTHO05D001849 6.0e-16 88.6 159 43.4
Thecc.08G062300 Theobroma cacao HOM05D001842 ORTHO05D001849 1.0e-15 87.8 173 36.4
MSTRG.988 Avicennia marina HOM05D001842 ORTHO05D001849 1.3e-15 87.4 155 45.2
Duzib093G1115 Durio zibethinus HOM05D001842 ORTHO05D001849 1.7e-15 87.0 173 35.8
Gorai.002G114800 Gossypium raimondii HOM05D001842 ORTHO05D001849 1.7e-15 87.0 186 36.6
RcHm_v2.0_Chr7g0215891 Rosa chinensis HOM05D001842 ORTHO05D001849 1.7e-15 87.0 177 35.0
Os03g0130500 Oryza sativa ssp. japonica HOM05D001842 ORTHO05D001849 3.9e-15 85.9 150 42.0
CiPaw.05G092800 Carya illinoinensis HOM05D001842 ORTHO05D001849 5.1e-15 85.5 149 43.6
Rhsim06G0005300 Rhododendron simsii HOM05D001842 ORTHO05D001849 5.1e-15 85.5 159 40.9
Cfa005365 Carpinus fangiana HOM05D001842 ORTHO05D001849 8.6e-15 84.7 120 48.3
COL.COLO4_07214 Corchorus olitorius HOM05D001842 ORTHO05D001849 8.6e-15 84.7 173 39.3
CiPaw.07G136200 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.9e-14 83.6 165 37.6
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 1.9e-14 83.6 122 49.2
CiPaw.08G075300 Carya illinoinensis HOM05D001842 ORTHO05D001849 2.5e-14 83.2 171 37.4
THA.LOC104809853 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 2.5e-14 83.2 179 35.2
BolC7t42821H Brassica oleracea HOM05D001842 ORTHO05D001849 5.6e-14 82.0 157 40.1
LjContig00081g0008818 Lotus japonicus HOM05D001842 ORTHO05D001849 7.3e-14 81.6 140 43.6
Haze_22829 Corylus avellana HOM05D001842 ORTHO05D001849 9.5e-14 81.3 158 41.8
Lalb_Chr11g0061511 Lupinus albus HOM05D001842 ORTHO05D001849 2.1e-13 80.1 200 36.0
Potri.002G008300 Populus trichocarpa HOM05D001842 ORTHO05D001849 2.1e-13 80.1 98 55.1
Lalb_Chr23g0265681 Lupinus albus HOM05D001842 ORTHO05D001849 2.8e-13 79.7 208 36.1
Medtr5g099170 Medicago truncatula HOM05D001842 ORTHO05D001849 2.8e-13 79.7 150 43.3
TPR.G18637 Trifolium pratense HOM05D001842 ORTHO05D001849 3.6e-13 79.3 154 41.6
ECA238G0776 Erigeron canadensis HOM05D001842 ORTHO05D001849 4.7e-13 79.0 181 35.4
Glyma.02G311333 Glycine max HOM05D001842 ORTHO05D001849 6.2e-13 78.6 145 40.0
Cfa014111 Carpinus fangiana HOM05D001842 ORTHO05D001849 8.1e-13 78.2 163 38.7
Migut.O00314 Erythranthe guttata HOM05D001842 ORTHO05D001849 8.1e-13 78.2 123 43.9
BcaB07g32071 Brassica carinata HOM05D001842 ORTHO05D001849 1.1e-12 77.8 171 37.4
Ciclev10000095m.g Citrus clementina HOM05D001842 ORTHO05D001849 1.1e-12 77.8 114 42.1
Psat5g009840 Pisum sativum HOM05D001842 ORTHO05D001849 1.1e-12 77.8 233 30.5
QL02p015109 Quercus lobata HOM05D001842 ORTHO05D001849 1.1e-12 77.8 115 47.8
Oeu026108.1 Olea europaea HOM05D001842 ORTHO05D001849 1.4e-12 77.4 178 39.9
Glyma.14G001200 Glycine max HOM05D001842 ORTHO05D001849 1.8e-12 77.0 147 39.5
Carub.0001s2021 Capsella rubella HOM05D001842 ORTHO05D001849 3.1e-12 76.3 182 36.3
Sp1g18460 Schrenkiella parvula HOM05D001842 ORTHO05D001849 3.1e-12 76.3 182 35.7
AT1G20760 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 4.0e-12 75.9 192 35.9
THA.LOC104813747 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 4.0e-12 75.9 177 35.6
Medtr3g115640 Medicago truncatula HOM05D001842 ORTHO05D001849 5.2e-12 75.5 114 42.1
vmacro21789 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 6.8e-12 75.1 154 38.3
AL1G33750 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 1.2e-11 74.3 182 35.7
BcaC05g25980 Brassica carinata HOM05D001842 ORTHO05D001849 2.0e-11 73.6 167 37.7
C05p19300 Brassica napus HOM05D001842 ORTHO05D001849 2.0e-11 73.6 167 37.7
BolC5t30637H Brassica oleracea HOM05D001842 ORTHO05D001849 2.0e-11 73.6 167 37.7
BraA06t24785Z Brassica rapa HOM05D001842 ORTHO05D001849 2.0e-11 73.6 167 37.7
CDE04G2613 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 2.0e-11 73.6 190 32.6
Phvul.008G292100 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 2.0e-11 73.6 155 36.8
Zm00001eb402480 Zea mays HOM05D001842 ORTHO05D001849 2.0e-11 73.6 126 43.7
TPR.G38237 Trifolium pratense HOM05D001842 ORTHO05D001849 4.4e-11 72.4 113 44.2
A06p16700 Brassica napus HOM05D001842 ORTHO05D001849 5.8e-11 72.0 167 37.1
Lsat_1_v5_gn_2_1961 Lactuca sativa HOM05D001842 ORTHO05D001849 7.6e-11 71.6 183 33.3
BraA07t29291Z Brassica rapa HOM05D001842 ORTHO05D001849 1.7e-10 70.5 171 33.3
Lalb_Chr04g0246921 Lupinus albus HOM05D001842 ORTHO05D001849 1.7e-10 70.5 148 38.5
BcaC06g34833 Brassica carinata HOM05D001842 ORTHO05D001849 2.2e-10 70.1 171 33.3
A07p15500 Brassica napus HOM05D001842 ORTHO05D001849 2.2e-10 70.1 171 33.3
C07p22830 Brassica napus HOM05D001842 ORTHO05D001849 2.2e-10 70.1 171 33.3
Ca_06502_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 2.9e-10 69.7 163 38.0
A08p29280 Brassica napus HOM05D001842 ORTHO05D001849 3.8e-10 69.3 187 33.2
SGA_v2.0_scaffold319G48553 Striga asiatica HOM05D001842 ORTHO05D001849 3.8e-10 69.3 136 39.7
BraA08t34863Z Brassica rapa HOM05D001842 ORTHO05D001849 6.4e-10 68.6 169 35.5
Aa31LG7G4920 Aethionema arabicum HOM05D001842 ORTHO05D001849 8.4e-10 68.2 183 32.8
arahy.Tifrunner.gnm1.ann1.649J27 Arachis hypogaea HOM05D001842 ORTHO05D001849 8.4e-10 68.2 149 38.9
BcaB03g14302 Brassica carinata HOM05D001842 ORTHO05D001849 8.4e-10 68.2 160 34.4
unitig_22.g5814 Utricularia gibba HOM05D001842 ORTHO05D001849 8.4e-10 68.2 108 42.6
CDE07G1300 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 2.4e-09 66.6 141 37.6
HanXRQChr14g0427401 Helianthus annuus HOM05D001842 ORTHO05D001849 4.1e-09 65.9 197 31.5
SGA_v2.0_scaffold235G43677 Striga asiatica HOM05D001842 ORTHO05D001849 4.1e-09 65.9 153 39.2
BcaB03g12856 Brassica carinata HOM05D001842 ORTHO05D001849 5.4e-09 65.5 180 32.8
C08p20340 Brassica napus HOM05D001842 ORTHO05D001849 7.1e-09 65.1 183 33.9
BolC8t49662H Brassica oleracea HOM05D001842 ORTHO05D001849 7.1e-09 65.1 183 33.9
Thhalv10006674m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 7.1e-09 65.1 181 32.0
MD05G1136400 Malus domestica HOM05D001842 ORTHO05D001849 7.1e-09 65.1 111 42.3
Oeu039712.1 Olea europaea HOM05D001842 ORTHO05D001849 7.1e-09 65.1 129 38.0
ATR0807G019 Amborella trichopoda HOM05D001842 ORTHO05D001849 9.2e-09 64.7 159 36.5
Lj1g0018894 Lotus japonicus HOM05D001842 ORTHO05D001849 9.2e-09 64.7 210 33.8
Sc05g0006840 Simmondsia chinensis HOM05D001842 ORTHO05D001849 9.2e-09 64.7 142 40.8
arahy.Tifrunner.gnm1.ann1.1FV09I Arachis hypogaea HOM05D001842 ORTHO05D001849 1.2e-08 64.3 140 40.0
CARHR021200 Cardamine hirsuta HOM05D001842 ORTHO05D001849 2.7e-08 63.2 178 32.6
Glyma.06G016700 Glycine max HOM05D001842 ORTHO05D001849 2.7e-08 63.2 137 37.2
Migut.C00364 Erythranthe guttata HOM05D001842 ORTHO05D001849 3.5e-08 62.8 65 53.8
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 4.6e-08 62.4 154 35.7
Medtr1g018480 Medicago truncatula HOM05D001842 ORTHO05D001849 7.8e-08 61.6 109 45.0
PGR042G2901 Punica granatum HOM05D001842 ORTHO05D001849 7.8e-08 61.6 123 39.0
CSS0030981 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.7e-07 60.5 196 30.6
PGSC0003DMG400009911 Solanum tuberosum HOM05D001842 ORTHO05D001849 3.0e-07 59.7 145 35.9
Atru.chr13.111 Acer truncatum HOM05D001842 ORTHO05D001849 8.7e-07 58.2 90 36.7
CDE04G3412 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 8.7e-07 58.2 186 33.9
arahy.Tifrunner.gnm1.ann1.3BY6RX Arachis hypogaea HOM05D001842 ORTHO05D001849 3.3e-06 56.2 142 35.9
AL1G34770 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 5.6e-06 55.5 100 41.0
AT1G21630 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 5.6e-06 55.5 131 35.9
FAN13G2297 Fragaria x ananassa HOM05D001842 ORTHO05D001849 5.6e-06 55.5 73 41.1
arahy.Tifrunner.gnm1.ann1.84FHQN Arachis hypogaea HOM05D001842 ORTHO05D001849 9.6e-06 54.7 144 36.1


User provided reference genes

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