Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 5.5e-65 250.8 122 100.0
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 1.5e-14 83.2 63 63.5
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.7e-13 79.7 63 58.7
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 2.2e-13 79.3 63 58.7
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 2.9e-13 79.0 64 57.8
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 3.8e-13 78.6 63 58.7
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 3.8e-13 78.6 63 60.3
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 4.9e-13 78.2 63 58.7
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 4.9e-13 78.2 64 57.8
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 4.9e-13 78.2 64 57.8
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 6.4e-13 77.8 63 58.7
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 6.4e-13 77.8 63 57.1
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 6.4e-13 77.8 64 57.8
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 6.4e-13 77.8 63 57.1
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 1.1e-12 77.0 64 57.8
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 1.4e-12 76.6 64 56.2
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 1.9e-12 76.3 64 56.2
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 1.9e-12 76.3 64 56.2
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 1.9e-12 76.3 65 60.0
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.9e-12 76.3 63 55.6
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 3.2e-12 75.5 63 55.6
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 4.2e-12 75.1 62 58.1
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 5.4e-12 74.7 63 57.1
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 9.3e-12 73.9 64 54.7
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 9.3e-12 73.9 64 54.7
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 9.3e-12 73.9 64 56.2
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 9.3e-12 73.9 62 56.5
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 1.2e-11 73.6 62 61.3
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 2.1e-11 72.8 64 53.1
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 3.5e-11 72.0 63 57.1
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 3.5e-11 72.0 63 50.8
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 3.5e-11 72.0 62 53.2
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 4.6e-11 71.6 63 55.6
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 4.6e-11 71.6 62 53.2
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 7.9e-11 70.9 63 52.4
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 1.0e-10 70.5 63 54.0
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 1.0e-10 70.5 62 53.2
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 1.0e-10 70.5 63 50.8
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.0e-10 70.5 63 50.8
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 1.0e-10 70.5 62 56.5
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 1.3e-10 70.1 63 54.0
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 1.3e-10 70.1 63 54.0
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.8e-10 69.7 63 50.8
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 3.0e-10 68.9 64 53.1
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 3.0e-10 68.9 65 55.4
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 3.0e-10 68.9 62 54.8
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 3.0e-10 68.9 62 54.8
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 3.0e-10 68.9 63 54.0
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 3.9e-10 68.6 62 53.2
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 3.9e-10 68.6 63 49.2
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 3.9e-10 68.6 65 52.3
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 3.9e-10 68.6 63 57.1
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 5.1e-10 68.2 61 50.8
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 5.1e-10 68.2 68 47.1
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 6.7e-10 67.8 62 53.2
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 6.7e-10 67.8 63 54.0
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 6.7e-10 67.8 62 51.6
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 8.7e-10 67.4 66 50.0
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 8.7e-10 67.4 66 50.0
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 8.7e-10 67.4 62 51.6
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 8.7e-10 67.4 63 49.2
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 8.7e-10 67.4 63 52.4
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 1.1e-09 67.0 63 54.0
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 1.9e-09 66.2 65 49.2
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 1.9e-09 66.2 63 46.0
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.5e-09 65.9 63 47.6
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 2.5e-09 65.9 68 48.5
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 3.3e-09 65.5 62 50.0
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 3.3e-09 65.5 62 50.0
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 5.6e-09 64.7 63 52.4
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 5.6e-09 64.7 63 49.2
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 7.4e-09 64.3 62 53.2
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 9.6e-09 63.9 66 47.0
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 1.3e-08 63.5 62 51.6
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 1.3e-08 63.5 63 46.0
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 1.3e-08 63.5 57 50.9
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 1.6e-08 63.2 64 46.9
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.1e-08 62.8 63 47.6
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 2.1e-08 62.8 63 44.4
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 2.1e-08 62.8 62 48.4
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 2.8e-08 62.4 62 48.4
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 2.8e-08 62.4 57 50.9
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 3.7e-08 62.0 62 48.4
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 4.8e-08 61.6 58 51.7
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 6.2e-08 61.2 64 51.6
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 6.2e-08 61.2 63 47.6
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 8.1e-08 60.8 62 46.8
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 8.1e-08 60.8 63 41.3
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 1.1e-07 60.5 58 48.3
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 1.4e-07 60.1 63 42.9
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 1.4e-07 60.1 64 46.9
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 2.4e-07 59.3 62 50.0
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 3.1e-07 58.9 59 50.8
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.5e-06 56.6 57 57.9
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 3.4e-06 55.5 53 50.9
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 3.4e-06 55.5 62 46.8


User provided reference genes

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