Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07812 Sapria himalayana HOM05D004236 ORTHO05D004903 3.3e-71 271.6 134 100.0
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 5.4e-13 78.2 86 51.2
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 5.4e-13 78.2 75 57.3
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 7.1e-13 77.8 75 56.0
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 7.1e-13 77.8 75 57.3
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 7.1e-13 77.8 75 54.7
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 7.1e-13 77.8 75 56.0
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 9.2e-13 77.4 97 47.4
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 9.2e-13 77.4 75 56.0
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.2e-12 77.0 93 49.5
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 1.2e-12 77.0 75 54.7
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.6e-12 76.6 75 57.3
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 1.6e-12 76.6 75 56.0
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 2.7e-12 75.9 75 53.3
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 2.7e-12 75.9 75 56.0
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.7e-12 75.9 50 72.0
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.7e-12 75.9 58 69.0
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 3.5e-12 75.5 75 52.0
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 3.5e-12 75.5 74 54.1
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 3.5e-12 75.5 75 52.0
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 3.5e-12 75.5 68 60.3
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 4.6e-12 75.1 74 54.1
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 4.6e-12 75.1 62 64.5
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 4.6e-12 75.1 75 54.7
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 6.0e-12 74.7 75 53.3
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 6.0e-12 74.7 75 53.3
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 6.0e-12 74.7 75 53.3
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 6.0e-12 74.7 75 54.7
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.8e-12 74.3 50 70.0
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.8e-12 74.3 50 70.0
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 7.8e-12 74.3 50 70.0
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 1.0e-11 73.9 50 72.0
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.0e-11 73.9 75 52.0
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.3e-11 73.6 76 51.3
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.3e-11 73.6 75 52.0
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.3e-11 73.6 75 52.0
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.3e-11 73.6 76 52.6
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.7e-11 73.2 50 70.0
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.7e-11 73.2 75 50.7
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.7e-11 73.2 75 50.7
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 1.7e-11 73.2 75 48.0
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.7e-11 73.2 75 54.7
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 1.7e-11 73.2 75 50.7
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 2.3e-11 72.8 75 50.7
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 2.3e-11 72.8 75 52.0
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 2.3e-11 72.8 75 48.0
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 2.3e-11 72.8 85 48.2
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 2.3e-11 72.8 75 50.7
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 3.0e-11 72.4 50 70.0
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 3.0e-11 72.4 75 53.3
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 3.0e-11 72.4 75 53.3
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 3.0e-11 72.4 50 68.0
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 3.9e-11 72.0 73 53.4
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 3.9e-11 72.0 75 53.3
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 3.9e-11 72.0 50 68.0
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 3.9e-11 72.0 50 68.0
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 3.9e-11 72.0 75 53.3
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 5.1e-11 71.6 75 53.3
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 5.1e-11 71.6 62 61.3
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 6.6e-11 71.2 50 68.0
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 6.6e-11 71.2 75 52.0
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 6.6e-11 71.2 73 54.8
Nitab4.5_0000901g0080 Nicotiana tabacum HOM05D004236 ORTHO05D000001 6.6e-11 71.2 73 54.8
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 6.6e-11 71.2 75 52.0
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 8.6e-11 70.9 75 53.3
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 8.6e-11 70.9 62 61.3
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 49.3
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 52.0
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 49.3
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 49.3
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 52.0
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 50.7
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.1e-10 70.5 62 62.9
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 52.0
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 1.1e-10 70.5 75 50.7
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.5e-10 70.1 75 50.7
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 1.5e-10 70.1 75 50.7
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 1.5e-10 70.1 65 60.0
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.5e-10 70.1 75 49.3
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.5e-10 70.1 73 50.7
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.5e-10 70.1 62 62.9
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.5e-10 70.1 62 62.9
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.5e-10 70.1 75 50.7
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.9e-10 69.7 75 50.7
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.9e-10 69.7 49 69.4
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 1.9e-10 69.7 41 78.0
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.9e-10 69.7 69 50.7
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.9e-10 69.7 73 50.7
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 2.5e-10 69.3 75 50.7
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 2.5e-10 69.3 75 50.7
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 2.5e-10 69.3 75 48.0
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 2.5e-10 69.3 75 52.0
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 2.5e-10 69.3 75 48.0
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 3.3e-10 68.9 75 49.3
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.3e-10 68.9 52 61.5
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.3e-10 68.9 52 61.5
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 3.3e-10 68.9 75 49.3
BcaB01g01715 Brassica carinata HOM05D004236 ORTHO05D004903 7.3e-10 67.8 75 49.3
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 9.6e-10 67.4 54 68.5
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.2e-09 67.0 77 44.2
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 1.2e-09 67.0 62 59.7
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 1.2e-09 67.0 49 63.3
Actinidia13574 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.6e-09 66.6 61 59.0
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.6e-09 66.6 49 61.2
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 1.6e-09 66.6 49 61.2
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.6e-09 66.6 58 62.1
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 1.6e-09 66.6 62 56.5
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 3.6e-09 65.5 75 48.0
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 6.2e-09 64.7 77 46.8
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 8.1e-09 64.3 65 53.8
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 8.1e-09 64.3 37 81.1
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.8e-08 63.2 63 54.0
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 1.8e-08 63.2 73 49.3
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 2.4e-08 62.8 39 71.8
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 2.4e-08 62.8 39 71.8
Potri.012G068550 Populus trichocarpa HOM05D004236 ORTHO05D004903 3.1e-08 62.4 39 76.9
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 3.1e-08 62.4 47 55.3
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 6.8e-08 61.2 68 51.5
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.2e-07 60.5 39 71.8
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 1.2e-07 60.5 39 71.8
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.2e-07 60.5 37 73.0
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.0e-07 59.7 39 71.8
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 3.4e-07 58.9 43 65.1
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 3.4e-07 58.9 43 65.1
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 3.4e-07 58.9 43 65.1
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 3.4e-07 58.9 39 69.2
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 3.4e-07 58.9 39 69.2
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 3.4e-07 58.9 39 69.2
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.4e-07 58.9 39 69.2
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.4e-07 58.9 39 69.2
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.4e-07 58.9 39 69.2
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 3.4e-07 58.9 43 65.1
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 7.6e-07 57.8 43 65.1
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 9.9e-07 57.4 58 51.7
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 1.7e-06 56.6 47 61.7
SHI24557 Sapria himalayana HOM05D000189 ORTHO05D007542 1.7e-06 56.6 37 73.0
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 6.4e-06 54.7 34 79.4


User provided reference genes

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