Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07811 Sapria himalayana HOM05D004236 ORTHO05D004903 2.0e-97 359.0 169 100.0
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 2.7e-09 66.2 70 45.7
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.5e-09 65.9 43 65.1
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.5e-09 65.9 43 65.1
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 6.0e-09 65.1 43 65.1
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.0e-08 64.3 43 65.1
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 3.0e-08 62.8 43 58.1
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 3.0e-08 62.8 43 62.8
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 3.0e-08 62.8 43 62.8
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 3.0e-08 62.8 43 60.5
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 3.9e-08 62.4 95 37.9
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 3.9e-08 62.4 54 53.7
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 6.6e-08 61.6 43 58.1
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 6.6e-08 61.6 43 60.5
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 6.6e-08 61.6 43 60.5
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 6.6e-08 61.6 43 60.5
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 60.5
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 62.8
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 60.5
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 60.5
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 60.5
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 60.5
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 60.5
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 8.6e-08 61.2 43 58.1
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 1.1e-07 60.8 43 60.5
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.1e-07 60.8 45 57.8
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.1e-07 60.8 43 60.5
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.1e-07 60.8 43 60.5
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 1.1e-07 60.8 43 58.1
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 1.1e-07 60.8 43 60.5
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 1.1e-07 60.8 43 60.5
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 1.5e-07 60.5 53 56.6
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 1.5e-07 60.5 43 60.5
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 1.9e-07 60.1 53 54.7
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 2.5e-07 59.7 43 58.1
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 2.5e-07 59.7 43 60.5
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 2.5e-07 59.7 43 55.8
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.5e-07 59.7 43 55.8
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 3.3e-07 59.3 43 58.1
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 3.3e-07 59.3 43 58.1
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 3.3e-07 59.3 43 55.8
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 3.3e-07 59.3 43 58.1
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 3.3e-07 59.3 43 58.1
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.3e-07 59.3 43 58.1
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 4.3e-07 58.9 43 55.8
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 4.3e-07 58.9 43 60.5
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 4.3e-07 58.9 43 58.1
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.3e-07 58.9 43 55.8
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.3e-07 58.9 44 54.5
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 4.3e-07 58.9 40 57.5
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 4.3e-07 58.9 43 58.1
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 5.6e-07 58.5 43 55.8
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 5.6e-07 58.5 43 58.1
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 5.6e-07 58.5 43 58.1
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 5.6e-07 58.5 43 55.8
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 5.6e-07 58.5 43 58.1
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 5.6e-07 58.5 49 53.1
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 5.6e-07 58.5 43 58.1
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 5.6e-07 58.5 43 58.1
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 5.6e-07 58.5 66 42.4
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 7.3e-07 58.2 43 55.8
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 7.3e-07 58.2 43 53.5
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 7.3e-07 58.2 53 50.9
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 7.3e-07 58.2 43 53.5
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 7.3e-07 58.2 43 53.5
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 7.3e-07 58.2 43 55.8
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 9.5e-07 57.8 43 55.8
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.2e-06 57.4 43 58.1
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.2e-06 57.4 43 58.1
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.2e-06 57.4 43 53.5
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.2e-06 57.4 53 45.3
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.2e-06 57.4 43 58.1
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 1.6e-06 57.0 43 58.1
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 1.6e-06 57.0 43 58.1
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.6e-06 57.0 43 55.8
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 1.6e-06 57.0 43 53.5
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 2.1e-06 56.6 64 43.8
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 2.1e-06 56.6 43 53.5
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 2.8e-06 56.2 43 55.8
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 2.8e-06 56.2 43 55.8
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 2.8e-06 56.2 43 55.8
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 2.8e-06 56.2 43 55.8
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 2.8e-06 56.2 43 55.8
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 2.8e-06 56.2 43 55.8
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 2.8e-06 56.2 43 55.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.8e-06 56.2 43 53.5
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 3.6e-06 55.8 43 58.1
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 3.6e-06 55.8 42 50.0
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 3.6e-06 55.8 43 55.8
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 3.6e-06 55.8 43 53.5
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 3.6e-06 55.8 43 51.2
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 3.6e-06 55.8 53 47.2
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 4.7e-06 55.5 43 51.2
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 6.2e-06 55.1 44 59.1
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 6.2e-06 55.1 43 55.8
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 6.2e-06 55.1 42 50.0
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 6.2e-06 55.1 43 51.2
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 8.1e-06 54.7 43 51.2
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 8.1e-06 54.7 43 53.5
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 8.1e-06 54.7 43 55.8


User provided reference genes

Program Settings