Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 1.3e-66 256.1 120 100.0
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 5.3e-20 101.3 71 67.6
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.7e-18 96.3 71 64.8
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.2e-18 95.9 71 64.8
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.2e-18 95.9 71 64.8
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.9e-18 95.5 71 64.8
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 8.5e-18 94.0 71 62.0
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 8.5e-18 94.0 71 60.6
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.5e-17 93.2 71 62.0
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 1.9e-17 92.8 71 62.0
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 4.2e-17 91.7 81 55.6
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 7.2e-17 90.9 71 60.6
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 9.4e-17 90.5 71 62.0
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 9.4e-17 90.5 71 60.6
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.2e-16 90.1 71 62.0
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 1.6e-16 89.7 67 62.7
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 2.1e-16 89.4 71 59.2
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 2.1e-16 89.4 71 60.6
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.1e-16 89.4 71 63.4
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 2.7e-16 89.0 71 59.2
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 3.6e-16 88.6 73 61.6
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 3.6e-16 88.6 71 59.2
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 3.6e-16 88.6 71 60.6
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 4.7e-16 88.2 71 59.2
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 4.7e-16 88.2 71 57.7
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 6.1e-16 87.8 74 56.8
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.0e-15 87.0 71 59.2
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.0e-15 87.0 71 59.2
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 1.4e-15 86.7 71 59.2
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 1.4e-15 86.7 71 57.7
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 1.8e-15 86.3 71 59.2
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 2.3e-15 85.9 71 60.6
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 3.0e-15 85.5 71 59.2
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 5.2e-15 84.7 71 59.2
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 5.2e-15 84.7 71 57.7
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 6.8e-15 84.3 74 55.4
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 6.8e-15 84.3 74 55.4
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 6.8e-15 84.3 75 58.7
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.5e-14 83.2 71 56.3
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.5e-14 83.2 71 56.3
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.5e-14 83.2 71 54.9
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 1.5e-14 83.2 71 56.3
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 2.0e-14 82.8 67 58.2
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 2.0e-14 82.8 71 56.3
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.0e-14 82.8 71 56.3
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 2.0e-14 82.8 71 56.3
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 2.0e-14 82.8 71 54.9
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 2.0e-14 82.8 71 59.2
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 2.6e-14 82.4 71 56.3
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.6e-14 82.4 71 59.2
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 2.6e-14 82.4 71 57.7
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 3.4e-14 82.0 71 56.3
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 4.4e-14 81.6 71 53.5
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 4.4e-14 81.6 71 54.9
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 5.7e-14 81.3 71 57.7
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 5.7e-14 81.3 71 59.2
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 7.5e-14 80.9 71 56.3
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 7.5e-14 80.9 71 53.5
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 7.5e-14 80.9 71 57.7
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 7.5e-14 80.9 71 54.9
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 7.5e-14 80.9 71 54.9
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 7.5e-14 80.9 81 54.3
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 9.8e-14 80.5 71 56.3
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 9.8e-14 80.5 71 54.9
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.3e-13 80.1 71 52.1
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.3e-13 80.1 71 54.9
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.3e-13 80.1 71 54.9
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.7e-13 79.7 71 53.5
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.2e-13 79.3 71 52.1
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 2.2e-13 79.3 71 54.9
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 2.8e-13 79.0 71 53.5
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 3.7e-13 78.6 84 51.2
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 3.7e-13 78.6 71 56.3
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 3.7e-13 78.6 71 54.9
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 4.8e-13 78.2 71 54.9
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 4.8e-13 78.2 71 50.7
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 6.3e-13 77.8 73 53.4
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 8.3e-13 77.4 71 54.9
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.1e-12 77.0 71 50.7
arahy.Tifrunner.gnm1.ann1.2X7NJS Arachis hypogaea HOM05D004236 ORTHO05D004903 1.4e-12 76.6 71 53.5
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 1.4e-12 76.6 71 53.5
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.4e-12 75.9 71 50.7
Lsat_1_v5_gn_2_36660 Lactuca sativa HOM05D004236 ORTHO05D004903 3.1e-12 75.5 68 54.4
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 4.1e-12 75.1 71 49.3
arahy.Tifrunner.gnm1.ann1.RD0JM0 Arachis hypogaea HOM05D004236 ORTHO05D004903 7.0e-12 74.3 68 52.9
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 9.1e-12 73.9 71 46.5
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 9.1e-12 73.9 71 46.5
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.2e-11 73.6 71 52.1
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.2e-11 73.6 71 50.7
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 1.6e-11 73.2 71 47.9
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 2.0e-11 72.8 63 57.1
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 2.0e-11 72.8 63 57.1
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 2.0e-11 72.8 63 57.1
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 2.0e-11 72.8 63 57.1
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 2.7e-11 72.4 71 47.9
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.7e-11 72.4 71 53.5
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 3.5e-11 72.0 71 49.3
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 4.5e-11 71.6 73 53.4
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 4.5e-11 71.6 72 52.8
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 5.9e-11 71.2 69 50.7
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 5.9e-11 71.2 71 50.7
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 1.0e-10 70.5 72 47.2
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 1.3e-10 70.1 72 45.8
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.7e-10 69.7 71 52.1
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.3e-10 69.3 67 50.7
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 2.3e-10 69.3 71 52.1
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 2.3e-10 69.3 71 52.1
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 2.9e-10 68.9 72 51.4
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 2.9e-10 68.9 69 52.2
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 3.8e-10 68.6 73 46.6
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 3.8e-10 68.6 71 50.7
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 3.8e-10 68.6 71 47.9
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 3.8e-10 68.6 67 50.7
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 6.6e-10 67.8 71 47.9
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 6.6e-10 67.8 71 50.7
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 8.6e-10 67.4 71 49.3
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 8.6e-10 67.4 71 49.3
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 8.6e-10 67.4 71 49.3
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 8.6e-10 67.4 71 49.3
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 8.6e-10 67.4 73 47.9
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 8.6e-10 67.4 67 52.2
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.1e-09 67.0 71 49.3
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.1e-09 67.0 71 47.9
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 1.5e-09 66.6 71 47.9
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 1.5e-09 66.6 71 49.3
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 1.9e-09 66.2 73 47.9
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 1.9e-09 66.2 71 47.9
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 2.5e-09 65.9 66 51.5
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 3.3e-09 65.5 71 49.3
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 3.3e-09 65.5 71 45.1
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 4.2e-09 65.1 71 45.1
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 8.0e-08 60.8 71 49.3
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 1.8e-07 59.7 80 40.0
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 1.2e-06 57.0 76 40.8
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.2e-06 57.0 36 75.0
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.6e-06 55.8 71 42.3


User provided reference genes

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