Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 3.0e-154 548.5 282 100.0
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.1e-28 131.3 218 38.5
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 3.3e-28 129.8 217 38.2
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 7.4e-28 128.6 218 38.1
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 1.3e-27 127.9 216 38.0
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.3e-27 127.9 218 37.2
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 1.6e-27 127.5 216 38.4
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.1e-27 127.1 218 37.6
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 2.1e-27 127.1 218 37.6
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.8e-27 126.7 218 38.1
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 3.6e-27 126.3 231 36.4
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 3.6e-27 126.3 215 37.7
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 3.6e-27 126.3 238 37.0
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 3.6e-27 126.3 215 38.1
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 3.6e-27 126.3 217 37.8
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 4.8e-27 125.9 216 37.5
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 4.8e-27 125.9 219 38.8
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 4.8e-27 125.9 216 38.4
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 6.2e-27 125.6 219 37.9
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 6.2e-27 125.6 216 38.0
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 6.2e-27 125.6 218 36.7
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 8.1e-27 125.2 218 37.6
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 8.1e-27 125.2 209 38.8
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 8.1e-27 125.2 220 37.3
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 1.1e-26 124.8 218 37.6
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 1.1e-26 124.8 218 36.2
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.1e-26 124.8 210 37.6
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 1.4e-26 124.4 209 38.3
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.4e-26 124.4 216 38.0
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 1.4e-26 124.4 216 38.0
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.4e-26 124.4 211 37.4
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.8e-26 124.0 221 35.7
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.8e-26 124.0 221 35.7
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.4e-26 123.6 211 37.0
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.4e-26 123.6 206 38.8
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 2.4e-26 123.6 242 35.1
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 3.1e-26 123.2 218 37.2
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 3.1e-26 123.2 218 36.2
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 3.1e-26 123.2 220 37.3
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 3.1e-26 123.2 217 36.4
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 4.0e-26 122.9 211 37.9
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 4.0e-26 122.9 206 37.4
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 5.3e-26 122.5 223 37.2
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 5.3e-26 122.5 223 37.2
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 5.3e-26 122.5 216 35.6
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 5.3e-26 122.5 216 37.0
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 5.3e-26 122.5 219 36.1
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 6.9e-26 122.1 247 35.6
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 6.9e-26 122.1 240 35.4
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 9.0e-26 121.7 244 34.8
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 9.0e-26 121.7 219 36.1
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 9.0e-26 121.7 216 36.6
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 9.0e-26 121.7 213 37.6
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 9.0e-26 121.7 218 37.2
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 9.0e-26 121.7 246 35.4
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 1.2e-25 121.3 225 35.6
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.2e-25 121.3 213 37.1
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.5e-25 120.9 216 37.0
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 1.5e-25 120.9 216 36.1
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.5e-25 120.9 217 37.8
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 2.0e-25 120.6 224 35.7
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 2.0e-25 120.6 216 36.6
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.0e-25 120.6 219 37.4
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 2.6e-25 120.2 212 36.3
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.6e-25 120.2 219 35.6
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 3.4e-25 119.8 226 36.3
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 3.4e-25 119.8 217 36.9
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.5e-25 119.4 212 35.8
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.5e-25 119.4 212 35.8
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 4.5e-25 119.4 214 36.4
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 4.5e-25 119.4 240 35.8
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 5.8e-25 119.0 225 36.0
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 5.8e-25 119.0 226 35.8
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 5.8e-25 119.0 218 34.9
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 5.8e-25 119.0 206 36.9
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 5.8e-25 119.0 218 36.2
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 5.8e-25 119.0 213 35.7
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 7.6e-25 118.6 216 36.6
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 7.6e-25 118.6 215 36.3
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 9.9e-25 118.2 212 36.3
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 9.9e-25 118.2 226 35.8
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.7e-24 117.5 217 35.9
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 2.2e-24 117.1 216 35.6
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.2e-24 117.1 214 35.0
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 2.9e-24 116.7 213 35.7
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 2.9e-24 116.7 215 37.7
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.9e-24 116.7 218 34.9
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 3.8e-24 116.3 225 35.6
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 3.8e-24 116.3 212 35.8
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 4.9e-24 115.9 224 34.8
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 4.9e-24 115.9 218 35.3
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 8.4e-24 115.2 210 36.7
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 8.4e-24 115.2 221 33.9
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 8.4e-24 115.2 218 33.9
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 8.4e-24 115.2 212 35.4
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.1e-23 114.8 218 34.9
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 1.1e-23 114.8 218 34.9
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 1.1e-23 114.8 212 36.3
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 1.4e-23 114.4 220 37.7
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 1.9e-23 114.0 216 35.6
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 3.2e-23 113.2 217 35.9
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 3.2e-23 113.2 217 34.6
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 5.5e-23 112.5 216 35.6
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 7.1e-23 112.1 218 34.9
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 7.1e-23 112.1 215 36.3
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 7.1e-23 112.1 215 36.3
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.6e-22 110.9 214 35.5
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 2.1e-22 110.5 206 35.9
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 3.5e-22 109.8 212 34.4
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 4.6e-22 109.4 219 34.2
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 4.6e-22 109.4 218 34.9
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 3.0e-21 106.7 217 32.7
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 3.9e-21 106.3 211 34.1
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 6.7e-21 105.5 207 34.3
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 4.3e-20 102.8 224 33.5
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 4.3e-20 102.8 217 32.7
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 2.1e-19 100.5 206 32.0
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 3.7e-19 99.8 207 32.4
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 2.4e-18 97.1 212 31.1
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 4.0e-18 96.3 209 32.1
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 6.9e-18 95.5 61 73.8
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 9.0e-18 95.1 201 33.3
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 1.2e-17 94.7 216 33.3
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 5.8e-17 92.4 52 80.8
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 1.7e-16 90.9 230 28.7
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 1.7e-16 90.9 72 66.7
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 4.9e-16 89.4 52 73.1
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 1.9e-15 87.4 91 47.3
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 2.7e-14 83.6 52 67.3
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 4.6e-14 82.8 52 69.2
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 6.0e-14 82.4 53 71.7
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 3.4e-09 66.6 80 47.5
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 7.6e-09 65.5 206 24.3
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 1.4e-07 61.2 35 77.1
Hma1.2p1_1189F.1_g265360 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 4.2e-07 59.7 35 71.4
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla HOM05D001472 ORTHO05D004903 7.2e-07 58.9 32 78.1
Hma1.2p1_0071F.1_g038110 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 9.3e-07 58.5 32 78.1
BraA02t06426Z Brassica rapa HOM05D004236 ORTHO05D004903 1.6e-06 57.8 37 67.6
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 2.7e-06 57.0 69 44.9


User provided reference genes

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