Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07780 Sapria himalayana HOM05D002756 ORTHO05D002896 1.0e-215 753.1 371 100.0
GSVIVG01005822001 Vitis vinifera HOM05D002756 ORTHO05D002896 1.6e-30 137.9 377 32.6
Ciclev10019703m.g Citrus clementina HOM05D002756 ORTHO05D002896 7.4e-28 129.0 491 28.9
CANSAT21G1520 Cannabis sativa HOM05D002756 ORTHO05D002896 1.3e-27 128.3 423 31.0
Dinv39178 Davidia involucrata HOM05D002756 ORTHO05D002896 1.4e-26 124.8 477 27.0
TWI81G0105 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 3.1e-26 123.6 474 27.8
Gohir.D12G217500 Gossypium hirsutum HOM05D002756 ORTHO05D002896 5.3e-26 122.9 443 27.8
Gorai.008G233100 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.5e-25 121.3 443 27.8
Potri.003G079900 Populus trichocarpa HOM05D002756 ORTHO05D002896 2.6e-25 120.6 166 42.8
CiPaw.11G082800 Carya illinoinensis HOM05D002756 ORTHO05D002896 4.5e-25 119.8 170 39.4
Atru.chr9.1260 Acer truncatum HOM05D002756 ORTHO05D002896 1.0e-24 118.6 163 41.7
Gohir.A12G214900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.2e-24 117.5 440 27.0
Manes.02G041900 Manihot esculenta HOM05D002756 ORTHO05D002896 2.2e-24 117.5 161 42.9
Sabra01G0124600 Salix brachista HOM05D002756 ORTHO05D002896 2.9e-24 117.1 177 40.7
Oeu017053.1 Olea europaea HOM05D002756 ORTHO05D002896 5.0e-24 116.3 161 42.9
Haze_07935 Corylus avellana HOM05D002756 ORTHO05D002896 6.5e-24 115.9 173 38.2
Peaxi162Scf00346g00062 Petunia axillaris HOM05D002756 ORTHO05D002896 6.5e-24 115.9 189 39.7
Potri.001G155000 Populus trichocarpa HOM05D002756 ORTHO05D002896 8.5e-24 115.5 165 41.8
QL12p010923 Quercus lobata HOM05D002756 ORTHO05D002896 8.5e-24 115.5 174 39.1
QL12p011144 Quercus lobata HOM05D002756 ORTHO05D002896 8.5e-24 115.5 174 39.1
Cc08_g12030 Coffea canephora HOM05D002756 ORTHO05D002896 1.1e-23 115.2 226 35.8
Thecc.03G246800 Theobroma cacao HOM05D002756 ORTHO05D002896 1.1e-23 115.2 161 41.6
Duzib068G0659 Durio zibethinus HOM05D002756 ORTHO05D002896 1.4e-23 114.8 181 37.0
Sabra03G0049800 Salix brachista HOM05D002756 ORTHO05D002896 1.4e-23 114.8 164 42.1
CSS0004447 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 1.9e-23 114.4 165 40.0
Solyc08g078290.1 Solanum lycopersicum HOM05D002756 ORTHO05D002896 2.5e-23 114.0 446 30.9
vmacro00014 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 3.2e-23 113.6 154 42.2
Nitab4.5_0002601g0020 Nicotiana tabacum HOM05D002756 ORTHO05D002896 4.2e-23 113.2 172 39.5
Hma1.2p1_1196F.1_g266030 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 9.4e-23 112.1 484 26.7
Hma1.2p1_1335F.1_g276370 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 9.4e-23 112.1 484 26.7
Nitab4.5_0007283g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 9.4e-23 112.1 149 45.6
Duzib205G1850 Durio zibethinus HOM05D002756 ORTHO05D002896 2.1e-22 110.9 163 39.9
Gohir.D03G166200 Gossypium hirsutum HOM05D002756 ORTHO05D002896 2.1e-22 110.9 320 33.1
Dinv21670 Davidia involucrata HOM05D002756 ORTHO05D002896 2.7e-22 110.5 158 40.5
Migut.A01149 Erythranthe guttata HOM05D002756 ORTHO05D002896 2.7e-22 110.5 384 29.9
CSS0042834 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 3.6e-22 110.2 168 37.5
Cfa012698 Carpinus fangiana HOM05D002756 ORTHO05D002896 3.6e-22 110.2 482 25.5
Gorai.003G175800 Gossypium raimondii HOM05D002756 ORTHO05D002896 3.6e-22 110.2 320 32.8
CAN.G1178.4 Capsicum annuum HOM05D002756 ORTHO05D002896 6.1e-22 109.4 151 43.0
PGSC0003DMG400026237 Solanum tuberosum HOM05D002756 ORTHO05D002896 7.9e-22 109.0 456 28.3
CiPaw.12G049400 Carya illinoinensis HOM05D002756 ORTHO05D002896 1.4e-21 108.2 163 39.3
Lalb_Chr09g0329931 Lupinus albus HOM05D002756 ORTHO05D002896 2.3e-21 107.5 464 28.2
Sopen08g026790 Solanum pennellii HOM05D002756 ORTHO05D002896 3.9e-21 106.7 447 30.2
Nn6g33844 Nelumbo nucifera HOM05D002756 ORTHO05D002896 6.7e-21 105.9 168 41.1
CAN.G62.18 Capsicum annuum HOM05D002756 ORTHO05D002896 8.8e-21 105.5 392 30.1
TAR629G0742 Trochodendron aralioides HOM05D002756 ORTHO05D002896 8.8e-21 105.5 157 37.6
TAR629G2869 Trochodendron aralioides HOM05D002756 ORTHO05D002896 8.8e-21 105.5 157 37.6
Phvul.003G223300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 1.5e-20 104.8 188 39.9
MD04G1061300 Malus domestica HOM05D002756 ORTHO05D002896 2.0e-20 104.4 153 39.9
Nn6g33847 Nelumbo nucifera HOM05D002756 ORTHO05D002896 2.0e-20 104.4 150 44.0
Gorai.003G175700 Gossypium raimondii HOM05D002756 ORTHO05D002896 2.6e-20 104.0 320 32.2
Sc07g0009180 Simmondsia chinensis HOM05D002756 ORTHO05D002896 2.6e-20 104.0 162 42.6
Eucgr.E00399 Eucalyptus grandis HOM05D002756 ORTHO05D002896 5.7e-20 102.8 170 35.9
FAN04G0448 Fragaria x ananassa HOM05D002756 ORTHO05D002896 5.7e-20 102.8 152 40.1
FAN08G2407 Fragaria x ananassa HOM05D002756 ORTHO05D002896 5.7e-20 102.8 152 40.1
Medtr4g100530 Medicago truncatula HOM05D002756 ORTHO05D002896 7.4e-20 102.4 443 28.0
RcHm_v2.0_Chr7g0204301 Rosa chinensis HOM05D002756 ORTHO05D002896 1.3e-19 101.7 152 39.5
VMungo0251G0835 Vigna mungo HOM05D002756 ORTHO05D002896 1.7e-19 101.3 195 36.9
FvH4_5g19610 Fragaria vesca HOM05D002756 ORTHO05D002896 2.2e-19 100.9 152 40.8
FAN13G0091 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.2e-19 100.9 152 39.5
Glyma.17G144800 Glycine max HOM05D002756 ORTHO05D002896 2.2e-19 100.9 197 36.0
FAN18G1828 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.8e-19 100.5 152 40.1
TPR.G37630 Trifolium pratense HOM05D002756 ORTHO05D002896 2.8e-19 100.5 430 28.4
HanXRQChr06g0164481 Helianthus annuus HOM05D002756 ORTHO05D002896 3.7e-19 100.1 375 28.0
Lalb_Chr16g0386561 Lupinus albus HOM05D002756 ORTHO05D002896 4.8e-19 99.8 172 40.1
Peaxi162Scf00190g00123 Petunia axillaris HOM05D002756 ORTHO05D002896 6.3e-19 99.4 403 29.3
TAR375G0301 Trochodendron aralioides HOM05D002756 ORTHO05D002896 6.3e-19 99.4 157 35.7
Actinidia02163 Actinidia chinensis HOM05D002756 ORTHO05D002896 8.2e-19 99.0 160 40.0
Lj8C270T8 Lonicera japonica HOM05D002756 ORTHO05D002896 8.2e-19 99.0 201 33.3
MELO3C013922.2 Cucumis melo HOM05D002756 ORTHO05D002896 1.4e-18 98.2 476 24.8
Duzib084G0904 Durio zibethinus HOM05D002756 ORTHO05D002896 1.4e-18 98.2 172 36.0
Ah.12g054420 Amaranthus hybridus HOM05D002756 ORTHO05D002896 9.1e-18 95.5 159 39.0
Aqoxy3G02766 Aquilegia oxysepala HOM05D002756 ORTHO05D002896 9.1e-18 95.5 171 35.1
Lj4g0006676 Lotus japonicus HOM05D002756 ORTHO05D002896 9.1e-18 95.5 159 41.5
ClCG10G002500 Citrullus lanatus HOM05D002756 ORTHO05D002896 1.2e-17 95.1 162 36.4
DCAR_008518 Daucus carota HOM05D002756 ORTHO05D002896 1.2e-17 95.1 411 26.5
PSO675G5676 Papaver somniferum HOM05D002756 ORTHO05D002896 1.5e-17 94.7 137 40.1
Cpa.g.sc89.63 Carica papaya HOM05D002756 ORTHO05D002896 2.0e-17 94.4 320 30.6
PSO732G0525 Papaver somniferum HOM05D002756 ORTHO05D002896 2.0e-17 94.4 202 34.7
Rhsim11G0050900 Rhododendron simsii HOM05D002756 ORTHO05D002896 3.4e-17 93.6 129 44.2
Psat4g073480 Pisum sativum HOM05D002756 ORTHO05D002896 7.7e-17 92.4 431 28.1
Sed0017596 Sechium edule HOM05D002756 ORTHO05D002896 2.2e-16 90.9 524 25.8
EL10Ac5g12331 Beta vulgaris HOM05D002756 ORTHO05D002896 5.0e-16 89.7 158 36.1
HanXRQChr17g0549241 Helianthus annuus HOM05D002756 ORTHO05D002896 5.0e-16 89.7 449 25.2
Nitab4.5_0002206g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 1.9e-15 87.8 375 28.8
Lalb_Chr05g0221081 Lupinus albus HOM05D002756 ORTHO05D002896 2.5e-15 87.4 114 45.6
Nitab4.5_0000618g0140 Nicotiana tabacum HOM05D002756 ORTHO05D002896 7.2e-15 85.9 402 29.1
PGR042G1682 Punica granatum HOM05D002756 ORTHO05D002896 7.2e-15 85.9 140 40.0
Dinv44072 Davidia involucrata HOM05D001866 ORTHO05D002896 9.4e-15 85.5 164 33.5
arahy.Tifrunner.gnm1.ann1.73EWJC Arachis hypogaea HOM05D002756 ORTHO05D002896 2.1e-14 84.3 105 41.9
PSO782G0082 Papaver somniferum HOM05D002756 ORTHO05D002896 2.1e-14 84.3 202 29.2
PSO063G5636 Papaver somniferum HOM05D002756 ORTHO05D002896 3.6e-14 83.6 175 29.7
Sopen06g020970 Solanum pennellii HOM05D002756 ORTHO05D002896 3.0e-13 80.5 348 29.9
arahy.Tifrunner.gnm1.ann1.4S09TY Arachis hypogaea HOM05D002756 ORTHO05D002896 3.9e-13 80.1 89 47.2
arahy.Tifrunner.gnm1.ann1.X9KLSS Arachis hypogaea HOM05D002756 ORTHO05D002896 3.9e-13 80.1 89 47.2
SGA_v2.0_scaffold199G41225 Striga asiatica HOM05D002756 ORTHO05D002896 3.9e-13 80.1 427 26.0
Actinidia33498 Actinidia chinensis HOM05D002756 ORTHO05D002896 5.2e-13 79.7 365 25.5
arahy.Tifrunner.gnm1.ann1.X0SKZJ Arachis hypogaea HOM05D002756 ORTHO05D002896 6.7e-13 79.3 89 47.2
CARHR223410 Cardamine hirsuta HOM05D002756 ORTHO05D002896 1.5e-12 78.2 200 32.5
Solyc06g060820.2 Solanum lycopersicum HOM05D002756 ORTHO05D002896 3.3e-12 77.0 359 29.5
vmacro22653 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 3.3e-12 77.0 117 39.3
CSS0007822 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 9.7e-12 75.5 221 28.5
PGSC0003DMG400024151 Solanum tuberosum HOM05D002756 ORTHO05D002896 1.7e-11 74.7 373 29.2
unitig_744.g24633 Utricularia gibba HOM05D002756 ORTHO05D002896 2.2e-11 74.3 151 32.5
CDE02G3283 Ceratophyllum demersum HOM05D002756 ORTHO05D002896 2.8e-11 73.9 130 33.8
Haze_02809 Corylus avellana HOM05D002756 ORTHO05D002896 2.8e-11 73.9 133 34.6
THA.LOC104807911 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 4.8e-11 73.2 176 31.2
ATR0057G080 Amborella trichopoda HOM05D002756 ORTHO05D002896 8.2e-11 72.4 169 30.2
Cpa.g.sc101.27 Carica papaya HOM05D002756 ORTHO05D002896 8.2e-11 72.4 92 35.9
Sp7g17320 Schrenkiella parvula HOM05D002756 ORTHO05D002896 1.1e-10 72.0 191 32.5
QL04p030920 Quercus lobata HOM05D002756 ORTHO05D002896 1.4e-10 71.6 104 37.5
CDE04G1179 Ceratophyllum demersum HOM05D000033 ORTHO05D002896 1.8e-10 71.2 213 30.5
Cfa011088 Carpinus fangiana HOM05D002756 ORTHO05D002896 2.4e-10 70.9 110 38.2
A01p20420 Brassica napus HOM05D002756 ORTHO05D002896 3.1e-10 70.5 265 28.3
BraA01t01971Z Brassica rapa HOM05D002756 ORTHO05D002896 3.1e-10 70.5 265 28.3
Gohir.D11G080900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 3.1e-10 70.5 173 30.6
Thhalv10024963m.g Eutrema salsugineum HOM05D002756 ORTHO05D002896 4.1e-10 70.1 196 30.6
BcaB04g18397 Brassica carinata HOM05D002756 ORTHO05D002896 5.3e-10 69.7 235 29.8
Gorai.N024700 Gossypium raimondii HOM05D002756 ORTHO05D002896 7.0e-10 69.3 173 30.6
HPP92_025695 Vanilla planifolia HOM05D002756 ORTHO05D002896 7.0e-10 69.3 359 26.7
BcaNung00149 Brassica carinata HOM05D002756 ORTHO05D002896 9.1e-10 68.9 274 27.4
BcaC09g50418 Brassica carinata HOM05D002756 ORTHO05D002896 1.2e-09 68.6 265 29.4
C01p25660 Brassica napus HOM05D002756 ORTHO05D002896 1.2e-09 68.6 265 29.4
Ciclev10024461m.g Citrus clementina HOM05D001866 ORTHO05D001915 1.2e-09 68.6 127 33.1
TPR.G12184 Trifolium pratense HOM05D002756 ORTHO05D002896 1.6e-09 68.2 110 35.5
MSTRG.17138 Avicennia marina HOM05D002756 ORTHO05D002896 2.0e-09 67.8 121 31.4
A04p01640 Brassica napus HOM05D002756 ORTHO05D002896 2.0e-09 67.8 144 29.9
Actinidia12652 Actinidia chinensis HOM05D002756 ORTHO05D002896 2.6e-09 67.4 131 33.6
Aa31LG10G14490 Aethionema arabicum HOM05D002756 ORTHO05D002896 2.6e-09 67.4 179 25.1
AL7G37860 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 2.6e-09 67.4 444 26.6
Sed0011081 Sechium edule HOM05D002756 ORTHO05D002896 2.6e-09 67.4 84 36.9
VMungo1383G3385 Vigna mungo HOM05D002756 ORTHO05D002896 2.6e-09 67.4 167 32.9
C04p32180 Brassica napus HOM05D002756 ORTHO05D002896 3.5e-09 67.0 119 31.9
BolC4t24769H Brassica oleracea HOM05D002756 ORTHO05D002896 3.5e-09 67.0 119 31.9
BolC8t48410H Brassica oleracea HOM05D002756 ORTHO05D002896 3.5e-09 67.0 235 29.4
Carub.0007s2697 Capsella rubella HOM05D002756 ORTHO05D002896 3.5e-09 67.0 123 26.8
Solyc01g090440.2 Solanum lycopersicum HOM05D002756 ORTHO05D002896 3.5e-09 67.0 114 33.3
Sopen01g036230 Solanum pennellii HOM05D002756 ORTHO05D002896 3.5e-09 67.0 114 33.3
BolC1t02520H Brassica oleracea HOM05D002756 ORTHO05D002896 4.5e-09 66.6 265 27.5
BcaC02g10154 Brassica carinata HOM05D002756 ORTHO05D002896 5.9e-09 66.2 119 30.3
Migut.A00727 Erythranthe guttata HOM05D002756 ORTHO05D002896 5.9e-09 66.2 125 34.4
Phvul.008G045300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 5.9e-09 66.2 97 38.1
BraA04t15888Z Brassica rapa HOM05D002756 ORTHO05D002896 7.7e-09 65.9 144 29.2
Lj1g0002162 Lotus japonicus HOM05D002756 ORTHO05D002896 1.0e-08 65.5 91 36.3
Medtr7g007880 Medicago truncatula HOM05D002756 ORTHO05D002896 1.0e-08 65.5 110 38.2
AT3G60380 Arabidopsis thaliana HOM05D002756 ORTHO05D002896 1.7e-08 64.7 90 32.2
BcaC07g38020 Brassica carinata HOM05D002756 ORTHO05D002896 1.7e-08 64.7 204 30.4
MELO3C022268.2 Cucumis melo HOM05D002756 ORTHO05D002896 1.7e-08 64.7 86 37.2
BcaB02g08170 Brassica carinata HOM05D002756 ORTHO05D002896 2.2e-08 64.3 202 26.2
CiPaw.13G027800 Carya illinoinensis HOM05D002756 ORTHO05D002896 2.2e-08 64.3 105 36.2
Rhsim01G0138600 Rhododendron simsii HOM05D002756 ORTHO05D002896 2.2e-08 64.3 88 36.4
PGSC0003DMG400025985 Solanum tuberosum HOM05D002756 ORTHO05D002896 2.9e-08 63.9 114 32.5
Thhalv10005806m.g Eutrema salsugineum HOM05D002756 ORTHO05D002896 5.0e-08 63.2 157 24.8
CARHR170700 Cardamine hirsuta HOM05D002756 ORTHO05D002896 6.5e-08 62.8 120 30.8
Sp5g02840 Schrenkiella parvula HOM05D002756 ORTHO05D002896 6.5e-08 62.8 126 26.2
SpUn0080_0020 Schrenkiella parvula HOM05D002756 ORTHO05D002896 6.5e-08 62.8 126 26.2
AT4G16790 Arabidopsis thaliana HOM05D002756 ORTHO05D002896 8.5e-08 62.4 232 28.9
HPP92_025690 Vanilla planifolia HOM05D002756 ORTHO05D002896 8.5e-08 62.4 353 27.5
AL5G42620 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 1.5e-07 61.6 90 31.1
Prupe.2G127500 Prunus persica HOM05D002756 ORTHO05D002896 1.5e-07 61.6 110 29.1
ClCG06G002590 Citrullus lanatus HOM05D002756 ORTHO05D002896 1.9e-07 61.2 84 34.5
CsaV3_6G008540 Cucumis sativus L. HOM05D002756 ORTHO05D002896 1.9e-07 61.2 86 33.7
Lalb_Chr03g0040271 Lupinus albus HOM05D002756 ORTHO05D002896 1.9e-07 61.2 117 31.6
Nitab4.5_0003553g0120 Nicotiana tabacum HOM05D002756 ORTHO05D002896 1.9e-07 61.2 115 31.3
A07p25060 Brassica napus HOM05D002756 ORTHO05D002896 2.5e-07 60.8 190 26.8
Nitab4.5_0003696g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 2.5e-07 60.8 115 31.3
BraA07t30146Z Brassica rapa HOM05D002756 ORTHO05D002896 3.2e-07 60.5 190 26.8
CANSAT78G0750 Cannabis sativa HOM05D002756 ORTHO05D002896 3.2e-07 60.5 195 27.2
Duzib138G1759 Durio zibethinus HOM05D002756 ORTHO05D002896 4.2e-07 60.1 114 31.6
Thecc.01G392600 Theobroma cacao HOM05D002756 ORTHO05D002896 4.2e-07 60.1 181 27.6
MD02G1216600 Malus domestica HOM05D002756 ORTHO05D002896 5.5e-07 59.7 128 32.8
MD07G1103700 Malus domestica HOM05D002756 ORTHO05D002896 5.5e-07 59.7 106 30.2
Lalb_Chr16g0386581 Lupinus albus HOM05D002756 ORTHO05D002896 7.2e-07 59.3 193 31.6
BolC6t37829H Brassica oleracea HOM05D002756 ORTHO05D002896 9.4e-07 58.9 164 27.4
SGA_v2.0_scaffold153G36916 Striga asiatica HOM05D002756 ORTHO05D002896 1.2e-06 58.5 112 31.2
Atru.chr5.159 Acer truncatum HOM05D002756 ORTHO05D002896 2.1e-06 57.8 94 33.0
CAN.G362.10 Capsicum annuum HOM05D002756 ORTHO05D002896 2.1e-06 57.8 105 32.4
BraA08t33260Z Brassica rapa HOM05D002756 ORTHO05D002896 2.7e-06 57.4 404 24.8
Carub.0007s2457 Capsella rubella HOM05D002756 ORTHO05D002896 3.6e-06 57.0 445 26.1
Glyma.18G253700 Glycine max HOM05D002756 ORTHO05D002896 3.6e-06 57.0 121 31.4
COL.COLO4_37105 Corchorus olitorius HOM05D002756 ORTHO05D002896 8.0e-06 55.8 86 44.2


User provided reference genes

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