Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 7.5e-39 163.3 79 100.0
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 4.2e-21 104.4 59 79.7
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 7.1e-21 103.6 59 79.7
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 9.3e-21 103.2 59 79.7
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.2e-20 102.8 59 78.0
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 1.6e-20 102.4 52 88.5
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.1e-20 102.1 59 79.7
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.1e-20 102.1 59 79.7
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.1e-20 102.1 59 79.7
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 2.7e-20 101.7 57 80.7
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 4.6e-20 100.9 52 86.5
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 6.0e-20 100.5 59 78.0
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 7.8e-20 100.1 60 75.0
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.3e-19 99.4 59 76.3
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.7e-19 99.0 50 86.0
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.7e-19 99.0 59 76.3
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 2.3e-19 98.6 59 76.3
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 3.9e-19 97.8 59 76.3
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 3.9e-19 97.8 59 74.6
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 3.9e-19 97.8 60 76.7
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 5.1e-19 97.4 63 71.4
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 5.1e-19 97.4 61 72.1
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 5.1e-19 97.4 63 73.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 6.6e-19 97.1 59 76.3
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 6.6e-19 97.1 67 70.1
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 6.6e-19 97.1 62 71.0
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 6.6e-19 97.1 58 77.6
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 8.7e-19 96.7 57 77.2
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 8.7e-19 96.7 57 77.2
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 8.7e-19 96.7 59 74.6
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 8.7e-19 96.7 59 74.6
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 1.1e-18 96.3 56 76.8
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.5e-18 95.9 50 86.0
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.5e-18 95.9 50 84.0
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.5e-18 95.1 49 87.8
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 2.5e-18 95.1 59 72.9
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 3.3e-18 94.7 57 73.7
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.3e-18 94.7 50 84.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.3e-18 94.4 59 69.5
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 7.3e-18 93.6 58 77.6
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 7.3e-18 93.6 54 83.3
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 9.6e-18 93.2 53 79.2
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 9.6e-18 93.2 63 71.4
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 9.6e-18 93.2 60 71.7
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.3e-17 92.8 59 67.8
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.3e-17 92.8 49 83.7
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.3e-17 92.8 52 80.8
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 1.6e-17 92.4 60 68.3
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.6e-17 92.4 60 68.3
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.6e-17 92.4 50 80.0
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 1.6e-17 92.4 58 75.9
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.6e-17 92.4 60 65.0
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 1.6e-17 92.4 59 71.2
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.1e-17 92.0 59 67.8
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 2.8e-17 91.7 55 76.4
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.6e-17 91.3 53 71.7
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 3.6e-17 91.3 60 68.3
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 4.8e-17 90.9 59 67.8
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 6.2e-17 90.5 59 67.8
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 6.2e-17 90.5 59 67.8
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 6.2e-17 90.5 59 67.8
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 6.2e-17 90.5 50 80.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 6.2e-17 90.5 59 67.8
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 6.2e-17 90.5 58 67.2
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 8.1e-17 90.1 58 72.4
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 1.1e-16 89.7 54 79.6
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 1.1e-16 89.7 54 79.6
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.1e-16 89.7 54 79.6
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 67.8
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 67.8
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 66.1
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 66.1
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 66.1
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 66.1
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 66.1
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-16 89.4 59 66.1
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.4e-16 89.4 54 79.6
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-16 89.0 65 60.0
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-16 89.0 59 66.1
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 1.8e-16 89.0 54 79.6
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.4e-16 88.6 59 64.4
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 2.4e-16 88.6 59 66.1
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 2.4e-16 88.6 50 82.0
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 2.4e-16 88.6 51 76.5
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 3.1e-16 88.2 52 73.1
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.1e-16 88.2 51 74.5
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 4.0e-16 87.8 46 84.8
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.0e-16 87.8 59 62.7
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.0e-16 87.8 54 75.9
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.0e-16 87.8 58 70.7
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 4.0e-16 87.8 58 70.7
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 4.0e-16 87.8 59 64.4
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.0e-16 87.8 45 84.4
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 5.3e-16 87.4 64 67.2
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 6.9e-16 87.0 62 69.4
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 6.9e-16 87.0 45 84.4
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.2e-15 86.3 59 66.1
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.5e-15 85.9 49 75.5
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.0e-15 85.5 45 82.2
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 2.6e-15 85.1 45 84.4
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 4.5e-15 84.3 55 67.3
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 4.5e-15 84.3 55 67.3
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 5.8e-15 84.0 59 66.1
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 7.6e-15 83.6 60 61.7
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 7.6e-15 83.6 60 61.7
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 9.9e-15 83.2 45 80.0
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 4.9e-14 80.9 54 66.7
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.9e-13 79.0 57 63.2
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 4.2e-13 77.8 57 63.2
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 1.6e-12 75.9 45 73.3
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.6e-12 74.3 67 55.2
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 6.0e-12 73.9 59 57.6
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.0e-11 73.2 49 63.3
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 3.0e-11 71.6 49 63.3
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.5e-10 69.3 35 82.9
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.3e-09 66.2 50 60.0
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.6e-09 65.9 37 75.7
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.8e-09 65.1 55 58.2
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 4.8e-09 64.3 51 56.9
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 3.1e-08 61.6 39 64.1
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 5.3e-08 60.8 30 83.3
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.2e-07 59.7 48 56.2
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 1.2e-07 59.7 38 63.2
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 1.5e-07 59.3 48 60.4
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 4.9e-06 54.3 39 56.4


User provided reference genes

Program Settings