Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.0e-202 709.9 368 100.0
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 8.8e-98 361.3 347 55.9
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 2.0e-97 360.1 343 57.4
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.4e-95 354.0 346 55.5
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 4.1e-95 352.4 345 55.4
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 4.2e-92 342.4 343 55.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.0e-90 337.8 337 54.3
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.3e-90 336.7 333 55.9
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 4.0e-90 335.9 335 54.6
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.0e-90 335.9 333 54.4
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 8.8e-90 334.7 336 55.7
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.6e-89 333.2 346 54.0
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 2.6e-89 333.2 346 52.3
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.3e-88 330.9 347 53.6
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.7e-88 330.5 343 52.8
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.2e-88 330.1 331 55.3
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 4.8e-88 328.9 342 53.2
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.4e-87 327.4 334 51.5
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.4e-87 327.4 337 54.6
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.1e-87 325.9 346 51.2
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 5.3e-87 325.5 343 53.1
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.2e-86 324.3 352 53.4
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.6e-86 323.9 350 53.1
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.6e-86 323.9 345 52.2
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.7e-86 323.2 364 51.1
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 7.7e-86 321.6 342 51.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.7e-86 321.6 342 51.2
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.0e-85 321.2 335 51.9
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.3e-85 320.9 315 56.2
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.9e-85 319.7 348 50.3
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.0e-85 318.9 340 50.9
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 6.5e-85 318.5 343 52.5
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 8.5e-85 318.2 355 50.1
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 8.5e-85 318.2 332 50.9
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.1e-84 317.8 332 52.1
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.9e-84 317.0 343 51.6
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.9e-84 317.0 353 49.9
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.5e-84 316.6 343 51.0
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 3.2e-84 316.2 354 50.0
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 5.5e-84 315.5 336 51.2
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.2e-83 314.3 349 50.1
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.2e-83 314.3 334 51.2
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.2e-83 314.3 350 49.4
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.7e-83 313.2 344 51.2
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 4.7e-83 312.4 344 50.9
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 6.1e-83 312.0 350 49.4
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 8.0e-83 311.6 344 50.9
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 8.0e-83 311.6 344 50.9
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 8.0e-83 311.6 348 51.4
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.8e-82 310.5 344 50.6
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.3e-82 310.1 326 50.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 3.0e-82 309.7 353 48.2
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.0e-82 309.7 326 51.2
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 5.2e-82 308.9 344 49.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 5.2e-82 308.9 348 51.7
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 8.8e-82 308.1 333 50.8
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.5e-81 307.4 322 51.9
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 5.7e-81 305.4 345 50.7
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 7.5e-81 305.1 315 54.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-80 304.3 333 51.4
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.7e-80 303.9 332 49.1
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.8e-80 303.1 331 53.2
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.7e-80 302.8 331 53.2
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 4.8e-80 302.4 332 49.7
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.4e-79 300.8 343 49.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 4.1e-79 299.3 333 51.1
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.6e-78 297.4 372 47.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.6e-78 297.4 331 48.6
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.3e-77 294.3 341 49.3
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.3e-77 293.5 346 49.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.9e-77 293.1 303 53.5
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.1e-76 291.2 331 47.7
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 4.7e-75 285.8 326 49.7
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.4e-74 284.3 315 52.4
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.5e-73 280.8 310 51.9
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 2.6e-73 280.0 343 47.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.7e-73 278.9 374 44.9
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.7e-72 276.2 343 46.9
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.0e-71 271.9 439 39.6
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.0e-70 270.4 323 48.3
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.0e-70 270.4 335 46.3
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.5e-70 269.6 333 46.2
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 6.6e-69 265.4 308 49.0
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.1e-68 264.6 290 49.3
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.5e-68 263.5 368 44.0
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 3.1e-66 256.5 276 50.4
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.9e-64 249.2 291 47.4
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 6.4e-64 248.8 271 50.6
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 6.4e-64 248.8 568 32.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.1e-63 246.1 334 44.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.5e-62 243.0 254 51.6
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 3.5e-62 243.0 264 50.4
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 3.5e-62 243.0 330 43.6
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 7.8e-62 241.9 310 44.5
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.7e-61 240.7 264 49.6
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.9e-60 237.3 386 40.4
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 9.5e-60 235.0 352 42.3
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.6e-59 234.2 344 40.7
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.7e-59 232.6 254 49.6
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.8e-58 230.7 305 46.2
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 4.0e-58 229.6 365 38.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 6.8e-58 228.8 354 42.1
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 7.5e-57 225.3 182 62.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 7.5e-57 225.3 247 51.4
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-54 217.6 173 63.0
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 6.6e-53 212.2 228 49.1
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.3e-52 209.9 167 61.7
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 4.3e-52 209.5 263 46.0
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.1e-51 207.2 227 49.8
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.7e-48 196.4 173 57.8
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 4.1e-47 193.0 232 49.6
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.1e-44 184.9 389 33.7
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 7.3e-44 182.2 230 45.2
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 6.8e-42 175.6 268 41.0
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.3e-36 156.8 150 56.0
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 9.3e-31 138.7 104 57.7
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.1e-28 131.7 164 45.7
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 6.2e-27 125.9 184 42.4
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.4e-23 114.8 425 26.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.2e-23 113.2 121 52.9
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 3.3e-20 103.6 362 26.8
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.8e-18 97.8 285 30.2
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.5e-15 86.3 68 67.6
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 9.3e-15 85.5 116 42.2
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 7.9e-14 82.4 83 54.2
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-13 81.6 50 74.0
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-13 81.3 50 74.0
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.7e-13 79.3 50 78.0
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 6.2e-11 72.8 66 59.1
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.2e-09 68.6 76 53.9
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.6e-09 67.4 51 64.7
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.8e-09 66.2 63 54.0
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.0e-08 65.5 44 65.9
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-08 64.3 75 48.0
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.9e-08 63.2 75 46.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.9e-08 63.2 75 46.7
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 7.1e-07 59.3 68 47.1
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.1e-07 59.3 75 45.3
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.3e-07 58.9 47 57.4


User provided reference genes

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