Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 3.7e-39 164.5 87 100.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.4e-17 92.8 78 64.1
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 2.4e-17 92.0 69 66.7
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 3.1e-17 91.7 68 67.6
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 5.2e-17 90.9 67 67.2
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 6.8e-17 90.5 62 72.6
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 8.9e-17 90.1 67 65.7
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 1.5e-16 89.4 67 64.2
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.5e-16 89.4 69 68.1
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 2.0e-16 89.0 67 68.7
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 5.8e-16 87.4 81 58.0
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 7.6e-16 87.0 65 67.7
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 9.9e-16 86.7 68 67.6
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.3e-15 86.3 66 65.2
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.7e-15 85.9 67 61.2
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.2e-15 85.5 76 61.8
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.2e-15 85.5 76 61.8
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.9e-15 85.1 70 58.6
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 2.9e-15 85.1 74 59.5
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 2.9e-15 85.1 68 64.7
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 3.8e-15 84.7 72 58.3
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 3.8e-15 84.7 59 69.5
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 3.8e-15 84.7 70 62.9
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.1e-14 83.2 66 62.1
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.4e-14 82.8 72 58.3
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 1.9e-14 82.4 61 68.9
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.9e-14 82.4 61 68.9
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.4e-14 82.0 69 59.4
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.4e-14 82.0 67 67.2
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.2e-14 81.6 76 59.2
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 4.2e-14 81.3 75 57.3
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 4.2e-14 81.3 75 57.3
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 4.2e-14 81.3 60 66.7
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 4.2e-14 81.3 70 58.6
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 7.1e-14 80.5 60 66.7
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 7.1e-14 80.5 75 57.3
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 7.1e-14 80.5 64 68.8
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 9.2e-14 80.1 89 53.9
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.2e-13 79.7 60 66.7
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.2e-13 79.7 60 66.7
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.1e-13 79.0 82 53.7
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 2.7e-13 78.6 69 59.4
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 2.7e-13 78.6 60 63.3
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.5e-13 78.2 85 48.2
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.5e-13 78.2 66 57.6
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.5e-13 78.2 58 69.0
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.0e-13 77.4 62 62.9
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 6.0e-13 77.4 61 63.9
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.0e-12 76.6 63 61.9
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.0e-12 76.6 67 62.7
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 1.0e-12 76.6 64 59.4
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.3e-12 76.3 57 64.9
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.7e-12 75.9 66 57.6
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.7e-12 75.9 68 54.4
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.7e-12 75.9 68 54.4
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.7e-12 75.9 68 54.4
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.3e-12 75.5 88 48.9
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 2.3e-12 75.5 62 61.3
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 2.3e-12 75.5 67 61.2
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 2.3e-12 75.5 61 55.7
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.3e-12 75.5 70 51.4
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 3.0e-12 75.1 68 54.4
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 3.0e-12 75.1 66 59.1
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 3.0e-12 75.1 61 57.4
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 3.0e-12 75.1 62 58.1
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 3.9e-12 74.7 62 54.8
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 3.9e-12 74.7 62 54.8
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 3.9e-12 74.7 61 55.7
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 5.1e-12 74.3 70 55.7
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 5.1e-12 74.3 69 55.1
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 5.1e-12 74.3 62 58.1
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 6.6e-12 73.9 62 59.7
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 8.7e-12 73.6 66 56.1
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 8.7e-12 73.6 68 55.9
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 8.7e-12 73.6 79 51.9
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 8.7e-12 73.6 68 55.9
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 8.7e-12 73.6 68 55.9
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 8.7e-12 73.6 68 55.9
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 8.7e-12 73.6 69 55.1
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 1.1e-11 73.2 69 56.5
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 1.1e-11 73.2 69 56.5
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.1e-11 73.2 69 55.1
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.5e-11 72.8 69 56.5
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.5e-11 72.8 69 56.5
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.5e-11 72.8 69 56.5
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 1.9e-11 72.4 67 52.2
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.5e-11 72.0 66 56.1
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 3.3e-11 71.6 57 61.4
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 4.3e-11 71.2 59 59.3
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 4.3e-11 71.2 81 48.1
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 4.3e-11 71.2 71 50.7
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 7.3e-11 70.5 81 45.7
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 7.3e-11 70.5 68 51.5
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 9.6e-11 70.1 84 48.8
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 1.3e-10 69.7 79 51.9
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 1.3e-10 69.7 79 51.9
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 1.6e-10 69.3 60 55.0
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 1.6e-10 69.3 60 53.3
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 1.6e-10 69.3 60 56.7
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 2.8e-10 68.6 62 54.8
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 4.8e-10 67.8 66 53.0
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.2e-10 67.4 70 50.0
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.2e-10 67.4 70 50.0
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 8.1e-10 67.0 69 50.7
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 8.1e-10 67.0 65 47.7
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.1e-09 66.6 82 43.9
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 1.8e-09 65.9 57 54.4
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 4.0e-09 64.7 57 54.4
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 9.0e-09 63.5 58 55.2
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 9.0e-09 63.5 58 55.2
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 1.2e-08 63.2 58 55.2
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.0e-08 62.4 56 57.1
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 9.9e-08 60.1 51 58.8
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 1.3e-07 59.7 59 47.5
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.3e-07 59.7 58 51.7
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.7e-07 59.3 57 52.6
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 2.2e-07 58.9 52 59.6
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 2.2e-07 58.9 57 50.9
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 3.2e-06 55.1 62 54.8


User provided reference genes

Program Settings