Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 2.7e-219 765.8 643 100.0
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 5.2e-29 133.7 296 39.9
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 8.9e-29 132.9 303 39.9
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 1.7e-27 128.6 298 38.9
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 7.0e-26 123.2 304 37.5
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 7.0e-26 123.2 296 38.5
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 3.5e-25 120.9 291 38.1
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.0e-24 119.4 296 36.8
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.3e-24 119.0 284 39.8
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 4.3e-23 114.0 298 37.9
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 7.3e-23 113.2 291 37.5
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.2e-22 112.5 299 37.1
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.2e-22 112.5 299 37.1
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.2e-22 112.5 296 38.5
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 1.2e-22 112.5 285 36.8
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.6e-22 112.1 293 36.2
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 2.8e-22 111.3 298 37.6
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 3.6e-22 110.9 283 37.1
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 3.6e-22 110.9 293 37.9
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 4.7e-22 110.5 283 36.7
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 6.2e-22 110.2 298 36.2
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 4.0e-21 107.5 289 36.7
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 5.2e-21 107.1 285 38.2
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 8.9e-21 106.3 290 35.2
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 1.5e-20 105.5 285 37.9
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 3.4e-20 104.4 304 35.9
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 4.4e-20 104.0 294 38.4
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 4.4e-20 104.0 300 34.7
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 4.4e-20 104.0 276 35.1
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 7.5e-20 103.2 287 36.9
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 7.5e-20 103.2 300 37.0
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 7.5e-20 103.2 282 34.8
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 9.8e-20 102.8 269 36.4
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 9.8e-20 102.8 299 35.8
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-19 102.4 299 35.5
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.7e-19 102.1 293 35.5
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.7e-19 102.1 281 35.9
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 2.9e-19 101.3 274 37.6
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 4.9e-19 100.5 297 34.7
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 6.4e-19 100.1 303 36.6
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 6.4e-19 100.1 298 34.6
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 8.3e-19 99.8 311 35.4
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 1.4e-18 99.0 300 37.0
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.4e-18 99.0 297 34.3
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.4e-18 99.0 288 34.7
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 1.4e-18 99.0 301 36.5
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 2.4e-18 98.2 299 35.5
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 3.2e-18 97.8 298 34.2
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 9.2e-18 96.3 286 34.3
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 9.2e-18 96.3 286 33.9
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.2e-17 95.9 305 34.8
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.2e-17 95.9 301 36.2
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 2.1e-17 95.1 300 36.0
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 2.1e-17 95.1 279 35.5
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 4.6e-17 94.0 270 34.8
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 4.6e-17 94.0 304 34.5
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 6.0e-17 93.6 282 33.7
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 6.0e-17 93.6 299 35.1
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 7.8e-17 93.2 300 36.3
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.3e-16 92.4 289 36.7
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 2.3e-16 91.7 278 35.6
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 3.0e-16 91.3 296 34.5
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 3.0e-16 91.3 282 34.8
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 6.6e-16 90.1 284 35.9
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.1e-15 89.4 293 35.8
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 1.9e-15 88.6 304 34.5
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 1.9e-15 88.6 279 34.4
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.5e-15 88.2 234 35.9
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.3e-15 87.8 269 36.4
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 4.3e-15 87.4 304 33.9
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 1.2e-14 85.9 294 33.0
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.8e-14 84.7 235 36.2
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 2.8e-14 84.7 276 32.2
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 6.2e-14 83.6 273 34.1
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 8.1e-14 83.2 297 33.3
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 1.1e-13 82.8 280 35.7
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 1.1e-13 82.8 280 35.7
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 1.4e-13 82.4 281 35.6
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.4e-13 82.4 303 31.4
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 1.8e-13 82.0 278 33.5
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 1.8e-13 82.0 290 32.1
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.8e-13 82.0 300 34.0
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 2.3e-13 81.6 294 35.0
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.3e-13 81.6 256 36.7
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.1e-13 81.3 317 30.9
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 3.1e-13 81.3 262 32.8
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 8.9e-13 79.7 295 33.9
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.2e-12 79.3 262 32.8
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.2e-12 79.3 303 31.0
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.2e-12 79.3 311 31.2
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 1.2e-12 79.3 278 32.4
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 1.5e-12 79.0 283 32.2
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 2.0e-12 78.6 128 42.2
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.0e-12 78.6 232 34.9
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 2.0e-12 78.6 251 34.7
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 2.6e-12 78.2 278 35.6
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 3.4e-12 77.8 140 40.7
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 3.4e-12 77.8 295 33.6
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 4.4e-12 77.4 286 34.6
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 7.6e-12 76.6 140 40.0
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 1.3e-11 75.9 290 34.5
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.2e-11 75.1 284 32.4
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.9e-11 74.7 290 34.5
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.9e-11 74.7 278 30.9
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 2.9e-11 74.7 242 32.2
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 4.9e-11 73.9 296 31.4
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 8.4e-11 73.2 270 33.0
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 8.4e-11 73.2 244 35.7
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.9e-10 72.0 274 30.3
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.9e-10 72.0 243 35.4
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 1.9e-10 72.0 311 30.9
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 1.9e-10 72.0 288 32.3
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 3.2e-10 71.2 254 31.9
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 3.2e-10 71.2 78 51.3
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 3.2e-10 71.2 296 32.1
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 5.4e-10 70.5 286 33.6
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 5.4e-10 70.5 273 31.9
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 9.2e-10 69.7 279 32.6
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 1.2e-09 69.3 196 34.2
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 1.2e-09 69.3 230 33.9
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 1.2e-09 69.3 239 33.1
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.1e-09 68.6 297 30.0
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 6.0e-09 67.0 249 32.9
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 6.0e-09 67.0 241 32.4
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 7.8e-09 66.6 284 29.6
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 1.0e-08 66.2 278 31.7
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 1.0e-08 66.2 192 32.8
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 1.3e-08 65.9 297 31.6
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 1.3e-08 65.9 273 31.1
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.7e-08 65.5 246 27.6
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 2.3e-08 65.1 133 39.8
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 2.3e-08 65.1 253 28.1
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 2.3e-08 65.1 253 28.1
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 3.0e-08 64.7 235 32.8
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 3.9e-08 64.3 241 30.3
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 5.1e-08 63.9 228 32.9
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 6.6e-08 63.5 176 33.0
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 8.6e-08 63.2 221 33.0
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 8.6e-08 63.2 208 32.7
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 8.6e-08 63.2 258 32.2
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.1e-07 62.8 61 50.8
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.1e-07 62.8 252 30.2
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.5e-07 62.4 223 32.3
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.9e-07 62.0 237 30.0
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 2.5e-07 61.6 274 30.3
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 2.5e-07 61.6 38 71.1
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 2.5e-07 61.6 38 71.1
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.5e-07 61.6 244 32.8
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.5e-07 61.6 244 32.8
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 2.5e-07 61.6 259 31.7
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 3.3e-07 61.2 287 29.3
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 5.6e-07 60.5 246 30.9
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 5.6e-07 60.5 253 29.6
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 7.3e-07 60.1 290 32.1
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 9.6e-07 59.7 210 30.5
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 1.2e-06 59.3 267 31.1
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 1.6e-06 58.9 90 40.0
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 1.6e-06 58.9 90 40.0
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.1e-06 58.5 172 33.1
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 2.1e-06 58.5 277 29.2
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.8e-06 58.2 75 42.7
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.7e-06 57.4 73 43.8
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 4.7e-06 57.4 205 27.8
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 8.1e-06 56.6 276 30.4


User provided reference genes

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