Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.0e-207 726.5 359 100.0
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.8e-104 382.9 312 58.3
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 1.2e-102 377.5 322 55.9
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.2e-102 377.5 314 56.4
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.1e-97 360.9 347 51.6
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 2.5e-97 359.8 325 53.8
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 2.5e-97 359.8 314 53.5
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.3e-97 359.4 325 52.9
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 5.6e-97 358.6 325 54.8
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 7.3e-97 358.2 317 54.6
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.1e-96 356.7 325 52.6
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 3.1e-95 352.8 315 54.0
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 3.1e-95 352.8 325 52.0
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.0e-95 352.4 325 52.0
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.2e-95 352.1 317 53.6
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 5.2e-95 352.1 317 53.6
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 5.2e-95 352.1 320 51.9
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 8.9e-95 351.3 319 53.3
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.5e-94 350.5 327 53.5
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 4.4e-94 349.0 326 51.8
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.7e-93 347.1 325 50.5
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 1.7e-93 347.1 325 49.8
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 2.9e-93 346.3 301 55.1
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 6.4e-93 345.1 329 52.6
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 3.2e-92 342.8 325 50.5
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.6e-91 340.5 329 52.3
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.6e-91 340.5 326 50.3
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.0e-91 340.1 308 52.9
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 3.5e-91 339.3 326 52.5
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 4.6e-91 339.0 314 53.5
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 4.6e-91 339.0 317 52.1
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 2.3e-90 336.7 325 50.8
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 3.9e-90 335.9 315 50.5
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 5.0e-90 335.5 325 49.5
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 5.0e-90 335.5 275 57.8
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 2.5e-89 333.2 325 49.5
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 2.5e-89 333.2 316 50.0
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 2.5e-89 333.2 290 55.9
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.3e-89 332.8 316 50.3
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 7.3e-89 331.6 315 49.5
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.8e-88 329.7 309 51.1
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.8e-88 329.7 322 49.7
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.6e-88 329.3 265 57.0
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 3.6e-88 329.3 318 51.6
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 4.7e-88 328.9 325 50.2
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 4.7e-88 328.9 312 49.4
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.4e-87 327.4 324 50.3
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.8e-87 327.0 314 49.7
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 2.3e-87 326.6 319 49.2
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 2.3e-87 326.6 341 48.4
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 3.1e-87 326.2 284 54.6
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 3.1e-87 326.2 312 48.7
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 4.0e-87 325.9 316 49.4
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 5.2e-87 325.5 295 52.9
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 5.2e-87 325.5 325 50.2
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 6.8e-87 325.1 326 51.5
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 1.5e-86 323.9 264 55.3
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 4.4e-86 322.4 264 56.4
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 5.8e-86 322.0 324 49.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 9.8e-86 321.2 274 54.7
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 9.8e-86 321.2 325 49.2
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 1.3e-85 320.9 312 48.7
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.3e-85 320.9 296 52.0
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.7e-85 320.5 260 57.3
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.7e-85 320.5 311 49.5
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 3.7e-85 319.3 325 48.9
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 6.4e-85 318.5 274 54.7
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.1e-84 317.8 324 49.1
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.9e-84 317.0 310 48.7
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 3.2e-84 316.2 312 48.1
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 1.2e-83 314.3 273 53.1
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.7e-83 313.2 314 49.4
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 4.6e-83 312.4 332 48.2
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 4.6e-83 312.4 313 49.2
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.0e-83 312.0 325 47.7
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 7.8e-83 311.6 316 49.7
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.3e-82 310.1 293 52.2
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 3.9e-82 309.3 298 51.0
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 5.1e-82 308.9 310 48.1
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 8.6e-82 308.1 264 55.3
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.1e-81 307.8 309 49.5
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.5e-81 307.4 321 46.4
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.9e-81 307.0 309 49.2
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 4.3e-81 305.8 331 46.8
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 5.6e-81 305.4 320 46.9
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 5.6e-81 305.4 320 47.2
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.6e-80 303.9 313 44.4
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 2.1e-80 303.5 319 46.4
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 3.6e-80 302.8 263 54.8
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 6.2e-80 302.0 301 50.8
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 6.2e-80 302.0 311 48.9
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 6.2e-80 302.0 301 50.8
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 4.4e-78 295.8 317 45.4
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.7e-77 292.7 295 48.1
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 5.4e-76 288.9 327 42.8
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 3.5e-75 286.2 323 45.8
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 4.6e-75 285.8 317 43.5
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 7.8e-75 285.0 317 44.2
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.5e-73 280.8 317 44.2
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.4e-71 273.5 257 51.8
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.0e-70 270.4 325 42.5
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 5.8e-70 268.9 231 52.8
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 4.0e-63 246.1 260 46.9
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 6.9e-63 245.4 273 45.1
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 4.9e-61 239.2 330 40.3
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 8.4e-61 238.4 280 46.1
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 3.2e-60 236.5 316 40.5
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 4.6e-59 232.6 269 45.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.2e-56 222.2 297 39.7
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.8e-55 220.7 197 54.3
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 2.2e-53 213.8 287 38.0
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 4.6e-51 206.1 316 36.4
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 6.0e-51 205.7 191 49.2
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-41 174.9 267 38.2
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.3e-41 173.3 255 36.9
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.2e-40 168.7 229 40.6
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-38 163.7 249 38.2
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-37 161.4 263 35.0
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-37 160.6 251 37.5
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 5.0e-37 159.5 277 33.9
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 8.4e-37 158.7 264 35.2
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-36 157.9 296 33.1
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.3e-36 155.2 240 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.3e-36 155.2 249 36.1
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.5e-35 153.3 221 35.7
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-35 152.9 267 34.5
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 6.1e-35 152.5 273 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.7e-34 148.7 232 33.6
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-33 147.1 285 31.6
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-32 144.4 231 36.8
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-31 141.7 284 31.3
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.1e-31 141.7 131 47.3
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.7e-26 122.5 305 29.2
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-23 114.4 272 27.9
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-22 110.5 235 28.1
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.5e-21 105.5 235 27.2
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 3.0e-18 97.1 267 27.7
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-14 85.1 211 24.6
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.2e-11 75.1 74 48.6
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-11 73.9 66 48.5
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 4.4e-09 66.6 40 62.5
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 9.7e-09 65.5 96 36.5
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 4.1e-07 60.1 88 37.5


User provided reference genes

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