Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06972 Sapria himalayana HOM05D006022 ORTHO05D007649 3.6e-143 511.5 251 100.0
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 5.9e-21 105.5 130 46.2
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 1.5e-19 100.9 176 38.6
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 5.6e-19 99.0 129 43.4
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 7.3e-19 98.6 134 42.5
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 9.5e-19 98.2 95 51.6
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 2.1e-18 97.1 153 39.2
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 4.7e-18 95.9 126 42.9
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 6.1e-18 95.5 131 40.5
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 6.1e-18 95.5 118 42.4
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 6.1e-18 95.5 91 52.7
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 8.0e-18 95.1 91 52.7
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 1.0e-17 94.7 99 45.5
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 2.3e-17 93.6 84 54.8
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 4.0e-17 92.8 125 42.4
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 6.8e-17 92.0 93 52.7
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 6.8e-17 92.0 128 43.0
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 8.9e-17 91.7 220 35.5
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 8.9e-17 91.7 175 37.7
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 8.9e-17 91.7 181 40.9
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 1.2e-16 91.3 83 54.2
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 1.2e-16 91.3 91 51.6
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 1.5e-16 90.9 181 40.3
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 2.0e-16 90.5 126 39.7
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 2.6e-16 90.1 80 53.8
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 2.6e-16 90.1 144 38.9
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 3.4e-16 89.7 93 51.6
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 4.4e-16 89.4 93 50.5
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 5.7e-16 89.0 126 38.9
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 9.8e-16 88.2 80 53.8
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 1.3e-15 87.8 93 51.6
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 1.3e-15 87.8 87 54.0
Nitab4.5_0004515g0030 Nicotiana tabacum HOM05D006022 ORTHO05D007649 1.3e-15 87.8 87 54.0
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 1.7e-15 87.4 175 37.1
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 1.7e-15 87.4 95 44.2
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 1.7e-15 87.4 95 44.2
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 2.2e-15 87.0 153 35.3
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 2.2e-15 87.0 97 44.3
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 2.2e-15 87.0 175 37.1
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 2.2e-15 87.0 86 54.7
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 2.9e-15 86.7 97 50.5
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 2.9e-15 86.7 95 44.2
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 3.7e-15 86.3 81 54.3
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 3.7e-15 86.3 81 54.3
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 6.4e-15 85.5 178 34.3
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 6.4e-15 85.5 89 52.8
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 8.3e-15 85.1 91 47.3
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 1.1e-14 84.7 183 30.6
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 1.1e-14 84.7 173 34.1
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 1.4e-14 84.3 121 38.8
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 1.8e-14 84.0 97 44.3
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 3.2e-14 83.2 104 43.3
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 7.0e-14 82.0 97 41.2
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 1.2e-13 81.3 84 51.2
arahy.Tifrunner.gnm1.ann1.DK6PZW Arachis hypogaea HOM05D006022 ORTHO05D007649 2.0e-13 80.5 91 46.2
HPP92_009830 Vanilla planifolia HOM05D006022 ORTHO05D007649 2.7e-13 80.1 87 46.0
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 3.5e-13 79.7 141 35.5
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 4.6e-13 79.3 91 46.2
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 7.8e-13 78.6 102 44.1
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 1.0e-12 78.2 92 45.7
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 1.0e-12 78.2 129 38.8
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 2.3e-12 77.0 97 46.4
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 3.0e-12 76.6 104 45.2
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 3.9e-12 76.3 119 37.0
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 3.9e-12 76.3 113 37.2
Oeu009974.1 Olea europaea HOM05D006022 ORTHO05D007649 6.6e-12 75.5 85 49.4
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 8.6e-12 75.1 84 47.6
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 3.3e-11 73.2 204 31.4
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 3.3e-11 73.2 80 45.0
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 4.3e-11 72.8 163 31.9
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 4.3e-11 72.8 116 39.7
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 4.3e-11 72.8 85 44.7
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 7.3e-11 72.0 143 36.4
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 2.8e-10 70.1 159 31.4
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 2.8e-10 70.1 89 39.3
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 2.8e-10 70.1 116 38.8
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 3.6e-10 69.7 120 35.8
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 6.2e-10 68.9 112 39.3
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 1.0e-09 68.2 141 31.2
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 1.0e-09 68.2 83 44.6
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 1.4e-09 67.8 103 44.7
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 2.3e-09 67.0 148 31.1
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 2.3e-09 67.0 148 31.1
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 2.3e-09 67.0 148 31.1
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 3.1e-09 66.6 87 42.5
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 1.2e-08 64.7 115 33.9
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 1.5e-08 64.3 80 45.0
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 2.0e-08 63.9 115 33.9
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 2.6e-08 63.5 81 39.5
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 3.4e-08 63.2 115 36.5
Hund11381 Selenicereus undatus HOM05D006022 ORTHO05D007649 8.3e-07 58.5 88 43.2
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 2.4e-06 57.0 96 35.4


User provided reference genes

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