Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 8.3e-216 753.4 386 100.0
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 1.4e-85 320.9 463 44.3
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 3.4e-84 316.2 463 46.0
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 1.7e-83 313.9 430 46.5
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.8e-83 312.8 459 44.4
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 1.4e-82 310.8 460 43.0
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 2.7e-81 306.6 466 41.8
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 7.8e-81 305.1 461 40.3
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.3e-80 304.3 465 42.4
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 6.6e-80 302.0 461 42.1
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.5e-79 300.8 461 41.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 1.5e-79 300.8 457 42.7
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 2.5e-79 300.1 469 44.3
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 2.5e-79 300.1 460 44.1
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 4.3e-79 299.3 456 41.9
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 5.6e-79 298.9 457 41.4
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 9.6e-79 298.1 455 42.2
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.3e-78 297.7 455 41.8
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 1.3e-78 297.7 470 41.3
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.6e-78 297.4 459 39.2
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.1e-78 297.0 455 42.0
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.8e-78 296.6 462 41.1
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.8e-78 296.6 461 40.6
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.6e-78 296.2 462 41.1
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 4.8e-78 295.8 457 41.4
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 6.2e-78 295.4 461 40.8
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 8.1e-78 295.0 461 39.3
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 8.1e-78 295.0 461 43.8
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.4e-77 294.3 461 40.8
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.4e-77 294.3 452 41.8
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 5.3e-77 292.4 466 40.6
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 5.3e-77 292.4 456 39.9
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 9.0e-77 291.6 457 39.8
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 9.0e-77 291.6 460 41.7
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.5e-76 290.8 460 41.7
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.0e-76 290.4 468 42.9
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.0e-76 290.4 463 42.1
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.6e-76 290.0 468 40.6
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 4.5e-76 289.3 518 37.8
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 4.5e-76 289.3 465 42.8
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 4.5e-76 289.3 478 39.1
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.8e-76 288.9 471 42.3
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 5.8e-76 288.9 457 39.2
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 7.6e-76 288.5 466 41.2
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 7.6e-76 288.5 458 40.8
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.3e-75 287.7 475 38.7
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.7e-75 287.3 461 39.0
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.7e-75 287.3 464 39.2
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.9e-75 286.6 467 40.0
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 3.8e-75 286.2 460 41.1
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 6.4e-75 285.4 460 42.8
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 6.4e-75 285.4 462 43.7
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 8.4e-75 285.0 464 39.9
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.4e-74 284.3 470 39.8
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.4e-74 284.3 460 42.0
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.4e-74 284.3 478 39.3
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.4e-74 282.3 474 40.1
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 1.6e-73 280.8 444 41.9
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 6.0e-73 278.9 451 39.7
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.3e-72 277.7 480 38.1
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 3.9e-72 276.2 456 39.5
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.1e-71 274.6 464 39.2
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 2.5e-71 273.5 427 41.0
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 2.4e-69 266.9 468 38.5
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.9e-67 260.0 503 37.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 9.3e-66 255.0 467 37.5
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 7.9e-65 251.9 449 38.5
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.9e-65 251.9 550 34.5
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 3.0e-64 250.0 471 38.0
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 6.7e-64 248.8 469 40.1
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 8.7e-64 248.4 471 37.8
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.5e-63 247.7 491 35.6
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.9e-63 247.3 485 34.8
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 4.3e-63 246.1 477 36.5
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 3.7e-62 243.0 469 36.0
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 6.2e-62 242.3 480 35.8
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 6.2e-62 242.3 474 37.1
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 6.2e-62 242.3 441 39.5
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 8.2e-62 241.9 474 37.1
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 8.2e-62 241.9 474 37.1
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.1e-61 241.5 473 37.0
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 1.4e-61 241.1 486 37.0
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 4.0e-61 239.6 473 36.8
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 9.0e-61 238.4 483 35.8
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.0e-59 235.0 522 34.9
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.2e-57 228.0 416 36.8
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 6.7e-56 222.2 484 37.0
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 9.7e-55 218.4 417 38.4
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 2.2e-54 217.2 349 42.1
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.3e-47 193.4 354 37.6
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 4.1e-45 186.4 200 52.5
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.3e-45 186.0 200 53.0
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 2.0e-44 184.1 201 50.2
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 7.7e-44 182.2 200 51.0
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 8.5e-43 178.7 207 48.3
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.6e-41 174.5 410 33.4
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.6e-41 174.5 383 38.9
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 6.1e-41 172.6 200 49.5
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.1e-40 169.5 476 28.4
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.9e-32 143.3 420 28.3
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 3.7e-30 136.7 142 51.4
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 3.1e-29 133.7 224 38.4
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 6.5e-27 125.9 147 44.2
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 5.5e-26 122.9 399 28.3
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.2e-25 121.7 145 41.4
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 8.8e-24 115.5 236 38.1
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.2e-23 115.2 451 26.6
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.5e-23 114.8 227 35.7
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.3e-22 111.7 83 63.9
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.4e-21 108.2 179 40.8
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 3.1e-21 107.1 67 68.7
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.7e-19 101.3 166 42.2
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.2e-19 100.9 67 64.2
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.7e-17 94.0 199 35.2
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 3.7e-14 83.6 201 33.3
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 2.3e-11 74.3 79 48.1
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.5e-10 70.9 87 47.1
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 7.2e-10 69.3 168 29.8
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.6e-09 68.2 52 51.9
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.4e-08 65.1 88 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 8.9e-08 62.4 75 44.0
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.2e-07 62.0 169 31.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.0e-07 61.2 379 21.6


User provided reference genes

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