Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06904 Sapria himalayana HOM05D000458 ORTHO05D037516 6.1e-45 183.7 90 100.0
Glyma.20G067600 Glycine max HOM05D000458 ORTHO05D000951 1.1e-09 66.6 57 57.9
Sp6g06760 Schrenkiella parvula HOM05D000458 ORTHO05D000951 1.9e-09 65.9 60 53.3
Lj5g0013588 Lotus japonicus HOM05D000458 ORTHO05D000951 2.4e-09 65.5 64 56.2
Gorai.004G130000 Gossypium raimondii HOM05D000458 ORTHO05D000951 3.2e-09 65.1 66 48.5
Manes.02G003325 Manihot esculenta HOM05D000458 ORTHO05D000951 3.2e-09 65.1 57 56.1
AT4G10730 Arabidopsis thaliana HOM05D000458 ORTHO05D000951 4.2e-09 64.7 60 51.7
MD14G1125200 Malus domestica HOM05D000458 ORTHO05D000951 7.1e-09 63.9 70 51.4
AL6G44780 Arabidopsis lyrata HOM05D000458 ORTHO05D000951 9.3e-09 63.5 60 50.0
Carub.0006s2950 Capsella rubella HOM05D000458 ORTHO05D000951 9.3e-09 63.5 60 50.0
CsaV3_3G000900 Cucumis sativus L. HOM05D000458 ORTHO05D000951 1.2e-08 63.2 66 48.5
Prupe.5G128900 Prunus persica HOM05D000458 ORTHO05D000951 1.2e-08 63.2 57 54.4
MELO3C013777.2 Cucumis melo HOM05D000458 ORTHO05D000951 1.6e-08 62.8 66 48.5
Gohir.D08G123200 Gossypium hirsutum HOM05D000458 ORTHO05D000951 1.6e-08 62.8 64 50.0
Duzib068G0844 Durio zibethinus HOM05D000458 ORTHO05D000951 2.1e-08 62.4 64 51.6
Migut.E00634 Erythranthe guttata HOM05D000458 ORTHO05D000951 2.1e-08 62.4 66 51.5
TAR629G0504 Trochodendron aralioides HOM05D000458 ORTHO05D000951 2.1e-08 62.4 65 52.3
FAN04G1309 Fragaria x ananassa HOM05D000458 ORTHO05D000951 2.7e-08 62.0 57 52.6
FAN13G1416 Fragaria x ananassa HOM05D000458 ORTHO05D000951 2.7e-08 62.0 57 52.6
FAN18G2465 Fragaria x ananassa HOM05D000458 ORTHO05D000951 2.7e-08 62.0 57 52.6
Psat6g053360 Pisum sativum HOM05D000458 ORTHO05D000951 2.7e-08 62.0 69 50.7
HPP92_022354 Vanilla planifolia HOM05D000458 ORTHO05D000951 2.7e-08 62.0 69 46.4
BcaB05g23887 Brassica carinata HOM05D000458 ORTHO05D000951 3.5e-08 61.6 56 53.6
Ciclev10019043m.g Citrus clementina HOM05D000458 ORTHO05D000951 3.5e-08 61.6 63 49.2
DCAR_006540 Daucus carota HOM05D000458 ORTHO05D000951 3.5e-08 61.6 57 54.4
TPR.G34818 Trifolium pratense HOM05D000458 ORTHO05D000951 3.5e-08 61.6 72 48.6
vmacro13852 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 3.5e-08 61.6 65 52.3
MSTRG.2014 Avicennia marina HOM05D000458 ORTHO05D000951 4.6e-08 61.2 64 50.0
FAN08G2912 Fragaria x ananassa HOM05D000458 ORTHO05D000951 4.6e-08 61.2 57 52.6
CARHR255870 Cardamine hirsuta HOM05D000458 ORTHO05D000951 6.0e-08 60.8 56 55.4
Eucgr.D01685 Eucalyptus grandis HOM05D000458 ORTHO05D000951 6.0e-08 60.8 64 50.0
Gohir.A08G081600 Gossypium hirsutum HOM05D000458 ORTHO05D000951 6.0e-08 60.8 64 48.4
Gorai.007G020100 Gossypium raimondii HOM05D000458 ORTHO05D000951 6.0e-08 60.8 66 50.0
Potri.001G084700 Populus trichocarpa HOM05D000458 ORTHO05D000951 6.0e-08 60.8 63 49.2
BcaC03g16388 Brassica carinata HOM05D000458 ORTHO05D000951 7.8e-08 60.5 56 51.8
A02p26500 Brassica napus HOM05D000458 ORTHO05D000951 7.8e-08 60.5 56 51.8
C02p42190 Brassica napus HOM05D000458 ORTHO05D000951 7.8e-08 60.5 56 51.8
BolC2t10258H Brassica oleracea HOM05D000458 ORTHO05D000951 7.8e-08 60.5 56 51.8
BraA02t07654Z Brassica rapa HOM05D000458 ORTHO05D000951 7.8e-08 60.5 56 51.8
Ca_09936_v3 Cicer arietinum L. HOM05D000458 ORTHO05D000951 7.8e-08 60.5 67 49.3
Ca_09946_v3 Cicer arietinum L. HOM05D000458 ORTHO05D000951 7.8e-08 60.5 67 49.3
Gohir.D12G240900 Gossypium hirsutum HOM05D000458 ORTHO05D000951 7.8e-08 60.5 65 49.2
Gorai.008G258000 Gossypium raimondii HOM05D000458 ORTHO05D000951 7.8e-08 60.5 65 49.2
MD06G1117800 Malus domestica HOM05D000458 ORTHO05D000951 7.8e-08 60.5 71 46.5
Solyc08g008550.4 Solanum lycopersicum HOM05D000458 ORTHO05D000951 7.8e-08 60.5 65 49.2
Sopen08g004390 Solanum pennellii HOM05D000458 ORTHO05D000951 7.8e-08 60.5 65 49.2
Atru.chr9.1897 Acer truncatum HOM05D000458 ORTHO05D000951 1.0e-07 60.1 63 46.0
Aqoxy7G00026 Aquilegia oxysepala HOM05D000458 ORTHO05D000951 1.0e-07 60.1 63 50.8
CSS0030470 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 1.0e-07 60.1 64 50.0
Potri.003G146000 Populus trichocarpa HOM05D000458 ORTHO05D000951 1.0e-07 60.1 63 49.2
CANSAT21G2234 Cannabis sativa HOM05D000458 ORTHO05D000951 1.3e-07 59.7 64 50.0
Duzib205G0849 Durio zibethinus HOM05D000458 ORTHO05D000951 1.3e-07 59.7 64 48.4
Nitab4.5_0001962g0020 Nicotiana tabacum HOM05D000458 ORTHO05D000951 1.3e-07 59.7 65 50.8
Thecc.03G221800 Theobroma cacao HOM05D000458 ORTHO05D000951 1.3e-07 59.7 64 48.4
TPR.G17779 Trifolium pratense HOM05D000458 ORTHO05D037516 1.3e-07 59.7 75 45.3
TPR.G29320 Trifolium pratense HOM05D000048 ORTHO05D037516 1.3e-07 59.7 68 48.5
Actinidia27288 Actinidia chinensis HOM05D000458 ORTHO05D000951 1.7e-07 59.3 64 50.0
Ah.12g053160 Amaranthus hybridus HOM05D000458 ORTHO05D000951 1.7e-07 59.3 65 46.2
Dinv12015 Davidia involucrata HOM05D000458 ORTHO05D000951 1.7e-07 59.3 64 48.4
QL02p028262 Quercus lobata HOM05D000458 ORTHO05D000951 1.7e-07 59.3 74 44.6
Rhsim07G0078200 Rhododendron simsii HOM05D000458 ORTHO05D000951 1.7e-07 59.3 65 52.3
PGSC0003DMG400012121 Solanum tuberosum HOM05D000458 ORTHO05D000951 1.7e-07 59.3 64 51.6
CAN.G567.83 Capsicum annuum HOM05D000458 ORTHO05D000951 2.3e-07 58.9 63 52.4
CAN.G792.27 Capsicum annuum HOM05D000458 ORTHO05D000951 2.3e-07 58.9 65 49.2
CiPaw.12G078000 Carya illinoinensis HOM05D000458 ORTHO05D000951 2.3e-07 58.9 67 47.8
MBI12_g30969_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D000951 2.3e-07 58.9 69 42.0
Nitab4.5_0004251g0060 Nicotiana tabacum HOM05D000458 ORTHO05D000951 2.3e-07 58.9 64 51.6
Nitab4.5_0007063g0050 Nicotiana tabacum HOM05D000458 ORTHO05D000951 2.3e-07 58.9 64 51.6
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 2.3e-07 58.9 64 51.6
Sabra01G0061400 Salix brachista HOM05D000458 ORTHO05D000951 2.3e-07 58.9 57 52.6
Sabra03G0106100 Salix brachista HOM05D000458 ORTHO05D000951 2.3e-07 58.9 57 50.9
Sed0026622 Sechium edule HOM05D000458 ORTHO05D000951 2.3e-07 58.9 69 43.5
Solyc08g083040.4 Solanum lycopersicum HOM05D000458 ORTHO05D000951 2.3e-07 58.9 64 51.6
Sopen08g031260 Solanum pennellii HOM05D000458 ORTHO05D000951 2.3e-07 58.9 64 51.6
Cpa.g.sc175.20 Carica papaya HOM05D000458 ORTHO05D000951 3.0e-07 58.5 71 45.1
Gohir.D11G018800 Gossypium hirsutum HOM05D000458 ORTHO05D000951 3.0e-07 58.5 64 48.4
Medtr1g077800 Medicago truncatula HOM05D000458 ORTHO05D000951 3.0e-07 58.5 65 49.2
Nitab4.5_0000673g0140 Nicotiana tabacum HOM05D000458 ORTHO05D000951 3.0e-07 58.5 65 50.8
CSS0020321 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 3.9e-07 58.2 64 48.4
CSS0034098 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 3.9e-07 58.2 64 48.4
Haze_09159 Corylus avellana HOM05D000458 ORTHO05D000951 3.9e-07 58.2 64 48.4
Haze_09165 Corylus avellana HOM05D000458 ORTHO05D000951 3.9e-07 58.2 64 48.4
Thhalv10028480m.g Eutrema salsugineum HOM05D000458 ORTHO05D000951 3.9e-07 58.2 56 48.2
TWI60G0068 Tripterygium wilfordii HOM05D000458 ORTHO05D000951 3.9e-07 58.2 64 48.4
Aa31LG9G11330 Aethionema arabicum HOM05D000458 ORTHO05D000951 5.1e-07 57.8 56 48.2
Glyma.10G173000 Glycine max HOM05D000458 ORTHO05D000951 5.1e-07 57.8 64 48.4
Glyma.20G217200 Glycine max HOM05D000458 ORTHO05D000951 5.1e-07 57.8 64 48.4
SGA_v2.0_scaffold127G33948 Striga asiatica HOM05D000458 ORTHO05D000951 5.1e-07 57.8 54 53.7
GSVIVG01019643001 Vitis vinifera HOM05D000458 ORTHO05D000951 5.1e-07 57.8 63 49.2
Dinv02053 Davidia involucrata HOM05D000458 ORTHO05D000951 6.6e-07 57.4 64 48.4
Gohir.A11G019100 Gossypium hirsutum HOM05D000458 ORTHO05D000951 6.6e-07 57.4 64 46.9
RcHm_v2.0_Chr7g0186821 Rosa chinensis HOM05D000458 ORTHO05D000951 6.6e-07 57.4 64 48.4
Lalb_Chr02g0149601 Lupinus albus HOM05D000458 ORTHO05D000951 1.1e-06 56.6 64 50.0
unitig_62.g23643 Utricularia gibba HOM05D000458 ORTHO05D000951 1.1e-06 56.6 63 50.8
CiPaw.11G113400 Carya illinoinensis HOM05D000458 ORTHO05D000951 1.5e-06 56.2 64 46.9
HanXRQChr06g0166821 Helianthus annuus HOM05D000458 ORTHO05D000951 1.5e-06 56.2 57 45.6
Lj2C157T11 Lonicera japonica HOM05D000458 ORTHO05D000951 1.5e-06 56.2 64 48.4
Lj6g0020947 Lotus japonicus HOM05D000458 ORTHO05D000951 1.5e-06 56.2 64 50.0
Hund11353 Selenicereus undatus HOM05D000458 ORTHO05D000951 1.5e-06 56.2 63 46.0
Sc01g0010640 Simmondsia chinensis HOM05D000458 ORTHO05D000951 1.5e-06 56.2 63 44.4
Hma1.2p1_0436F.1_g152725 Hydrangea macrophylla HOM05D000458 ORTHO05D000951 1.9e-06 55.8 63 47.6
Hma1.2p1_0440F.1_g153800 Hydrangea macrophylla HOM05D000458 ORTHO05D000951 1.9e-06 55.8 63 47.6
Lalb_Chr21g0311641 Lupinus albus HOM05D000458 ORTHO05D000951 1.9e-06 55.8 57 52.6
arahy.Tifrunner.gnm1.ann1.RKT4NC Arachis hypogaea HOM05D000458 ORTHO05D000951 2.5e-06 55.5 64 46.9
Sp7g22060 Schrenkiella parvula HOM05D000458 ORTHO05D000951 2.5e-06 55.5 63 49.2
arahy.Tifrunner.gnm1.ann1.5DM86W Arachis hypogaea HOM05D000458 ORTHO05D000951 3.3e-06 55.1 64 46.9
AUR62007046 Chenopodium quinoa HOM05D000458 ORTHO05D000951 3.3e-06 55.1 66 42.4
AUR62019910 Chenopodium quinoa HOM05D000458 ORTHO05D000951 3.3e-06 55.1 66 42.4
ClCG10G000830 Citrullus lanatus HOM05D000458 ORTHO05D000951 3.3e-06 55.1 94 36.2
Nn3g18885 Nelumbo nucifera HOM05D000458 ORTHO05D000951 3.3e-06 55.1 64 45.3
Phvul.006G000033 Phaseolus vulgaris HOM05D000458 ORTHO05D000951 3.3e-06 55.1 57 50.9
EL10Ac5g12438 Beta vulgaris HOM05D000458 ORTHO05D000951 4.3e-06 54.7 65 43.1
Carub.0007s1700 Capsella rubella HOM05D000458 ORTHO05D000951 4.3e-06 54.7 63 49.2
THA.LOC104806453 Tarenaya hassleriana HOM05D000458 ORTHO05D000951 4.3e-06 54.7 56 50.0
Gohir.A12G239700 Gossypium hirsutum HOM05D000458 ORTHO05D000951 5.6e-06 54.3 65 46.2
Lsat_1_v5_gn_3_14081 Lactuca sativa HOM05D000458 ORTHO05D000951 5.6e-06 54.3 64 45.3
HPP92_022342 Vanilla planifolia HOM05D000458 ORTHO05D000951 5.6e-06 54.3 69 43.5
MSTRG.12198 Avicennia marina HOM05D000458 ORTHO05D000951 7.3e-06 53.9 68 44.1
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 7.3e-06 53.9 94 34.0
MBI04_g33412_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D000951 7.3e-06 53.9 73 37.0
AL7G29190 Arabidopsis lyrata HOM05D000458 ORTHO05D000951 9.6e-06 53.5 63 47.6
Lalb_Chr06g0168621 Lupinus albus HOM05D000458 ORTHO05D000951 9.6e-06 53.5 65 43.1
Phvul.L005401 Phaseolus vulgaris HOM05D000458 ORTHO05D000951 9.6e-06 53.5 65 46.2
unitig_22.g5511 Utricularia gibba HOM05D000458 ORTHO05D000951 9.6e-06 53.5 70 47.1
VMungo0720G2969 Vigna mungo HOM05D000458 ORTHO05D000951 9.6e-06 53.5 65 46.2


User provided reference genes

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