Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06882 Sapria himalayana HOM05D002872 ORTHO05D003204 3.8e-227 791.2 411 100.0
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 2.5e-29 134.0 167 52.1
Duzib168G2058 Durio zibethinus HOM05D002872 ORTHO05D003204 7.4e-29 132.5 171 50.9
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 6.3e-28 129.4 168 51.8
CANSAT11G1709 Cannabis sativa HOM05D002872 ORTHO05D003204 1.1e-27 128.6 167 50.3
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.1e-27 128.6 167 51.5
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 4.1e-27 126.7 168 49.4
Gohir.A13G211000 Gossypium hirsutum HOM05D002872 ORTHO05D003204 5.3e-27 126.3 167 51.5
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 6.9e-27 125.9 170 47.1
Gohir.D13G214900 Gossypium hirsutum HOM05D002872 ORTHO05D003204 1.2e-26 125.2 167 50.9
Gorai.013G245200 Gossypium raimondii HOM05D002872 ORTHO05D003204 1.2e-26 125.2 167 50.9
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 1.2e-26 125.2 168 48.8
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 2.0e-26 124.4 168 48.8
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 2.0e-26 124.4 168 46.4
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 5.9e-26 122.9 172 47.7
Prupe.6G001300 Prunus persica HOM05D002872 ORTHO05D003204 1.0e-25 122.1 168 48.8
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 1.0e-25 122.1 168 47.0
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 1.3e-25 121.7 168 48.2
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 1.7e-25 121.3 168 48.2
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 2.2e-25 120.9 168 48.2
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 3.8e-25 120.2 168 47.6
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 3.8e-25 120.2 168 47.6
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 3.8e-25 120.2 168 47.6
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 3.8e-25 120.2 168 47.6
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 3.8e-25 120.2 168 48.2
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 5.0e-25 119.8 168 44.6
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 5.0e-25 119.8 168 46.4
BraA03t14737Z Brassica rapa HOM05D002872 ORTHO05D003204 5.0e-25 119.8 246 39.8
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 5.0e-25 119.8 250 37.2
CDE08G0031 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 6.5e-25 119.4 168 45.8
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 6.5e-25 119.4 168 48.2
C07p54870 Brassica napus HOM05D002872 ORTHO05D003204 1.1e-24 118.6 168 47.0
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 1.1e-24 118.6 168 46.4
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 1.4e-24 118.2 168 47.0
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 2.5e-24 117.5 168 48.2
CARHR233960 Cardamine hirsuta HOM05D002872 ORTHO05D003204 3.2e-24 117.1 168 45.2
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 4.2e-24 116.7 168 47.0
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 4.2e-24 116.7 168 45.2
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 4.2e-24 116.7 168 47.6
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 4.2e-24 116.7 168 45.8
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 4.2e-24 116.7 168 45.8
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 5.5e-24 116.3 168 45.2
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 5.5e-24 116.3 168 45.8
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 5.5e-24 116.3 167 45.5
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 7.2e-24 115.9 168 45.2
BcaC06g32751 Brassica carinata HOM05D002872 ORTHO05D003204 9.4e-24 115.5 168 45.8
MD11G1001100 Malus domestica HOM05D002872 ORTHO05D003204 9.4e-24 115.5 168 47.0
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 9.4e-24 115.5 168 45.2
THA.LOC104811711 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 9.4e-24 115.5 168 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2790 Anthoceros agrestis HOM05D002872 ORTHO05D003204 1.6e-23 114.8 168 47.0
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 1.6e-23 114.8 168 44.0
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 1.6e-23 114.8 168 44.0
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 1.6e-23 114.8 168 45.8
CiPaw.13G179400 Carya illinoinensis HOM05D002872 ORTHO05D003204 2.7e-23 114.0 166 45.2
Lj4g0027888 Lotus japonicus HOM05D002872 ORTHO05D003204 2.7e-23 114.0 163 49.1
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 3.6e-23 113.6 168 44.0
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 4.7e-23 113.2 163 48.5
CsaV3_1G041510 Cucumis sativus L. HOM05D002872 ORTHO05D003204 6.1e-23 112.8 168 43.5
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 6.1e-23 112.8 168 45.8
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 1.0e-22 112.1 246 37.0
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 1.0e-22 112.1 185 44.9
Sc16g0012250 Simmondsia chinensis HOM05D002872 ORTHO05D003204 1.0e-22 112.1 168 44.0
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 1.4e-22 111.7 168 45.8
RcHm_v2.0_Chr5g0084061 Rosa chinensis HOM05D002872 ORTHO05D003204 2.3e-22 110.9 168 44.0
Glyma.07G225100 Glycine max HOM05D002872 ORTHO05D003204 3.0e-22 110.5 163 47.9
Ca_18794_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 5.1e-22 109.8 191 42.9
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 5.1e-22 109.8 204 39.2
TPR.G34033 Trifolium pratense HOM05D002872 ORTHO05D003204 5.1e-22 109.8 168 46.4
VMungo0251G2931 Vigna mungo HOM05D002872 ORTHO05D003204 5.1e-22 109.8 168 45.8
ATR0068G080 Amborella trichopoda HOM05D002872 ORTHO05D003204 1.5e-21 108.2 168 42.3
Psat7g134440 Pisum sativum HOM05D002872 ORTHO05D003204 4.4e-21 106.7 168 45.2
SEGI_35371 Sequoiadendron giganteum HOM05D002872 ORTHO05D003204 5.7e-21 106.3 168 43.5
FvH4_3g45950 Fragaria vesca HOM05D002872 ORTHO05D003204 7.4e-21 105.9 168 44.6
Phvul.002G101500 Phaseolus vulgaris HOM05D002872 ORTHO05D003204 1.3e-20 105.1 168 44.6
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 2.8e-20 104.0 167 43.1
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 1.1e-19 102.1 168 43.5
Pp3c20_17010 Physcomitrium patens HOM05D002872 ORTHO05D003204 3.1e-19 100.5 163 43.6
Mapoly0004s0186 Marchantia polymorpha HOM05D002872 ORTHO05D003204 4.1e-19 100.1 186 40.9
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 7.0e-19 99.4 172 40.7
Lalb_Chr09g0328951 Lupinus albus HOM05D002872 ORTHO05D003204 1.2e-18 98.6 168 42.3
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 2.2e-17 94.4 183 39.3
HanXRQChr02g0057611 Helianthus annuus HOM05D002872 ORTHO05D003204 2.2e-17 94.4 165 40.6
Cpa.g.sc119.19 Carica papaya HOM05D002872 ORTHO05D003204 1.5e-16 91.7 136 44.9
AUR62040893 Chenopodium quinoa HOM05D002872 ORTHO05D003204 9.4e-16 89.0 192 37.5
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 2.1e-15 87.8 138 44.9
MSTRG.12807 Avicennia marina HOM05D002872 ORTHO05D003204 1.4e-14 85.1 138 43.5
HPP92_014370 Vanilla planifolia HOM05D002872 ORTHO05D003204 3.0e-14 84.0 168 34.5
Os03g0324800 Oryza sativa ssp. japonica HOM05D002872 ORTHO05D003204 4.0e-14 83.6 213 32.4
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 2.6e-13 80.9 168 35.7
Nitab4.5_0000075g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 5.7e-13 79.7 117 43.6
FAN16G3031 Fragaria x ananassa HOM05D002872 ORTHO05D003204 7.5e-13 79.3 140 42.9
Zm00001eb015470 Zea mays HOM05D002872 ORTHO05D003204 7.5e-13 79.3 168 35.7
SMO230G0092 Selaginella moellendorffii HOM05D002872 ORTHO05D003204 1.3e-12 78.6 163 36.8
Dinv44110 Davidia involucrata HOM05D002872 ORTHO05D003204 2.2e-12 77.8 168 36.3
Hund20608 Selenicereus undatus HOM05D002872 ORTHO05D003204 2.2e-12 77.8 124 43.5
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea HOM05D002872 ORTHO05D003204 3.7e-12 77.0 138 42.0
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 4.8e-12 76.6 77 57.1
Manes.01G270200 Manihot esculenta HOM05D002872 ORTHO05D003204 8.2e-12 75.9 168 33.3
Prupe.2G135800 Prunus persica HOM05D002872 ORTHO05D003204 1.4e-11 75.1 172 34.3
Pp3c23_11620 Physcomitrium patens HOM05D002872 ORTHO05D003204 2.4e-11 74.3 162 34.0
AUR62042622 Chenopodium quinoa HOM05D002872 ORTHO05D003204 4.1e-11 73.6 177 35.0
PGR004G0587 Punica granatum HOM05D002872 ORTHO05D003204 5.3e-11 73.2 168 33.3
TAR375G1003 Trochodendron aralioides HOM05D002872 ORTHO05D003204 5.3e-11 73.2 163 33.1
FAN25G3552 Fragaria x ananassa HOM05D002872 ORTHO05D003204 7.0e-11 72.8 168 35.1
Rhsim01G0135700 Rhododendron simsii HOM05D002872 ORTHO05D003204 1.2e-10 72.0 163 33.1
DCAR_001960 Daucus carota HOM05D002872 ORTHO05D003204 1.6e-10 71.6 77 54.5
FAN11G0810 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.6e-10 71.6 87 50.6
FAN21G2326 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.6e-10 71.6 87 50.6
MD07G1087600 Malus domestica HOM05D002872 ORTHO05D003204 1.6e-10 71.6 168 34.5
Potri.002G142900 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.6e-10 71.6 168 32.1
MELO3C015562.2 Cucumis melo HOM05D002872 ORTHO05D003204 2.0e-10 71.2 77 51.9
PSO170G1934 Papaver somniferum HOM05D002872 ORTHO05D003204 3.5e-10 70.5 168 33.3
SHI29224 Sapria himalayana HOM05D039069 ORTHO05D037529 3.5e-10 70.5 163 37.4
GSVIVG01018179001 Vitis vinifera HOM05D002872 ORTHO05D003204 4.5e-10 70.1 168 33.3
SalBow3G2375 Salvia bowleyana HOM05D002872 ORTHO05D003204 7.7e-10 69.3 77 54.5
Gorai.001G175600 Gossypium raimondii HOM05D002872 ORTHO05D003204 1.0e-09 68.9 165 30.3
Oeu009620.1 Olea europaea HOM05D002872 ORTHO05D003204 1.0e-09 68.9 163 31.9
PSO017G4318 Papaver somniferum HOM05D002872 ORTHO05D003204 1.3e-09 68.6 168 32.7
Nn6g33937 Nelumbo nucifera HOM05D002872 ORTHO05D003204 1.7e-09 68.2 168 31.0
SHI12169 Sapria himalayana HOM05D000004 ORTHO05D000002 1.7e-09 68.2 61 63.9
COL.COLO4_12468 Corchorus olitorius HOM05D002872 ORTHO05D003204 2.2e-09 67.8 172 29.7
arahy.Tifrunner.gnm1.ann1.FMK0QZ Arachis hypogaea HOM05D002872 ORTHO05D003204 2.9e-09 67.4 263 25.9
arahy.Tifrunner.gnm1.ann1.PGQ24G Arachis hypogaea HOM05D002872 ORTHO05D003204 2.9e-09 67.4 163 31.3
Hma1.2p1_0341F.1_g130280 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 2.9e-09 67.4 168 31.0
TWI59G0864 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 2.9e-09 67.4 262 25.2
MSTRG.4917 Avicennia marina HOM05D002872 ORTHO05D003204 3.8e-09 67.0 162 34.0
MBI04_g09510_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 3.8e-09 67.0 166 31.3
Gohir.A07G147400 Gossypium hirsutum HOM05D002872 ORTHO05D003204 5.0e-09 66.6 168 29.8
Nitab4.5_0002304g0050 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.1e-08 65.5 160 30.6
SHI08351 Sapria himalayana HOM05D002872 ORTHO05D003204 1.1e-08 65.5 38 86.8
CSS0005850 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 1.5e-08 65.1 168 31.0
Ciclev10021755m.g Citrus clementina HOM05D002872 ORTHO05D003204 1.5e-08 65.1 171 31.6
Atru.chr5.218 Acer truncatum HOM05D002872 ORTHO05D003204 1.9e-08 64.7 172 32.0
THA.LOC104802474 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 1.9e-08 64.7 162 32.1
Gohir.D07G153500 Gossypium hirsutum HOM05D002872 ORTHO05D003204 2.5e-08 64.3 168 28.6
Lalb_Chr03g0039911 Lupinus albus HOM05D002872 ORTHO05D003204 2.5e-08 64.3 172 30.2
Solyc01g090770.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 4.2e-08 63.5 168 28.6
PGSC0003DMG400025977 Solanum tuberosum HOM05D002872 ORTHO05D003204 4.2e-08 63.5 163 29.4
Glyma.11G165710 Glycine max HOM05D002872 ORTHO05D003204 5.5e-08 63.2 168 29.2
Lalb_Chr19g0127461 Lupinus albus HOM05D002872 ORTHO05D003204 5.5e-08 63.2 172 29.7
vmacro21040 Vaccinium macrocarpon HOM05D002872 ORTHO05D003204 5.5e-08 63.2 181 32.0
Peaxi162Scf00377g00042 Petunia axillaris HOM05D002872 ORTHO05D003204 7.2e-08 62.8 163 30.7
TAR636G3536 Trochodendron aralioides HOM05D002872 ORTHO05D003204 7.2e-08 62.8 49 69.4
Sopen01g036500 Solanum pennellii HOM05D002872 ORTHO05D003204 9.4e-08 62.4 163 29.4
Thecc.01G385700 Theobroma cacao HOM05D002872 ORTHO05D003204 9.4e-08 62.4 168 29.2
Potri.014G058700 Populus trichocarpa HOM05D002872 ORTHO05D003204 1.2e-07 62.0 262 27.5
unitig_22.g6799 Utricularia gibba HOM05D002872 ORTHO05D003204 1.2e-07 62.0 162 32.1
Duzib133G1334 Durio zibethinus HOM05D002872 ORTHO05D003204 3.6e-07 60.5 172 29.1
Sp4g27120 Schrenkiella parvula HOM05D002872 ORTHO05D003204 3.6e-07 60.5 162 30.2
Ciclev10029731m.g Citrus clementina HOM05D002872 ORTHO05D003204 4.7e-07 60.1 73 50.7
CAN.G899.13 Capsicum annuum HOM05D002872 ORTHO05D003204 6.1e-07 59.7 163 29.4
Lj7C539G2 Lonicera japonica HOM05D002872 ORTHO05D003204 6.1e-07 59.7 168 29.2
RcHm_v2.0_Chr1g0348701 Rosa chinensis HOM05D002872 ORTHO05D003204 8.0e-07 59.3 167 31.7
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 8.0e-07 59.3 163 30.7
Aa31LG1G26640 Aethionema arabicum HOM05D002872 ORTHO05D003204 1.0e-06 58.9 162 29.0
AT2G45060 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 1.0e-06 58.9 162 29.6
Cc02_g24600 Coffea canephora HOM05D002872 ORTHO05D003204 1.0e-06 58.9 163 28.8
AL4G44150 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 1.4e-06 58.5 162 29.0
Ca_07812_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 1.4e-06 58.5 163 28.2
QL04p035844 Quercus lobata HOM05D002872 ORTHO05D003204 1.4e-06 58.5 166 29.5
TAR376G0744 Trochodendron aralioides HOM05D002872 ORTHO05D003204 1.4e-06 58.5 49 67.3
Nitab4.5_0000706g0100 Nicotiana tabacum HOM05D002872 ORTHO05D003204 1.8e-06 58.2 163 31.9
Actinidia33487 Actinidia chinensis HOM05D002872 ORTHO05D003204 2.3e-06 57.8 150 30.7
Carub.0004s2765 Capsella rubella HOM05D002872 ORTHO05D003204 2.3e-06 57.8 162 29.0
Lj1g0022495 Lotus japonicus HOM05D002872 ORTHO05D003204 2.3e-06 57.8 163 28.2
CARHR140310 Cardamine hirsuta HOM05D002872 ORTHO05D003204 3.0e-06 57.4 162 29.6
Migut.N01761 Erythranthe guttata HOM05D002872 ORTHO05D003204 4.0e-06 57.0 213 27.2
CsaV3_6G009100 Cucumis sativus L. HOM05D002872 ORTHO05D003204 8.8e-06 55.8 163 27.6
Sed0024906 Sechium edule HOM05D002872 ORTHO05D003204 8.8e-06 55.8 168 26.2


User provided reference genes

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