Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 7.2e-113 410.6 211 100.0
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.2e-59 233.8 165 80.0
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 6.5e-53 211.5 173 67.1
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.1e-52 210.7 171 68.4
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.9e-52 209.9 185 63.8
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 3.2e-52 209.1 171 68.4
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.5e-51 205.7 173 65.3
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 3.9e-50 202.2 177 63.3
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.9e-50 202.2 174 64.9
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 6.7e-50 201.4 173 64.7
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.9e-49 199.9 166 66.3
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.3e-49 198.7 205 57.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 5.7e-49 198.4 205 56.6
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 9.6e-49 197.6 171 63.7
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.3e-48 197.2 179 63.1
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.6e-48 196.8 171 63.2
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 2.1e-48 196.4 175 64.6
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.8e-48 196.1 172 66.3
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.8e-48 196.1 166 64.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.8e-48 195.3 172 64.0
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.4e-47 193.7 185 60.0
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.8e-47 193.4 172 62.8
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.4e-47 193.0 169 65.1
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.1e-47 192.2 192 58.3
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 4.1e-47 192.2 171 63.2
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 4.1e-47 192.2 172 64.5
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 4.1e-47 192.2 169 63.9
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 5.3e-47 191.8 173 60.7
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 9.0e-47 191.0 175 60.0
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 9.0e-47 191.0 195 61.0
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.2e-46 190.7 168 63.7
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.2e-46 190.7 173 64.2
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.5e-46 190.3 162 66.7
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.0e-46 189.9 164 62.8
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.0e-46 189.9 168 65.5
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.6e-46 189.5 173 61.8
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.5e-46 188.7 178 61.8
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 5.8e-46 188.3 165 65.5
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 5.8e-46 188.3 166 61.4
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 5.8e-46 188.3 189 58.7
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 5.8e-46 188.3 165 64.2
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.0e-45 187.6 171 60.2
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.0e-45 187.6 166 62.0
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.3e-45 187.2 166 61.4
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.3e-45 187.2 168 64.3
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.9e-45 186.0 175 61.1
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.9e-45 186.0 173 63.0
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.8e-45 185.7 182 59.9
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 6.5e-45 184.9 163 65.0
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 6.5e-45 184.9 171 60.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 8.4e-45 184.5 200 57.5
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.4e-44 183.7 166 61.4
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.5e-44 183.0 171 59.1
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 2.5e-44 183.0 174 60.9
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 3.2e-44 182.6 166 60.8
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.2e-44 182.6 188 60.6
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.2e-44 182.6 175 62.3
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.5e-44 181.8 172 60.5
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 5.5e-44 181.8 171 60.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 5.5e-44 181.8 174 60.3
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 9.3e-44 181.0 171 60.2
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.2e-43 180.6 173 61.3
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-43 180.3 166 60.8
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.6e-43 180.3 166 60.8
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.1e-43 179.9 171 59.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 2.7e-43 179.5 165 59.4
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.7e-43 179.5 171 59.6
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.5e-43 179.1 173 59.5
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.6e-43 178.7 175 60.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 7.9e-43 177.9 175 60.0
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 7.9e-43 177.9 175 60.0
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 7.9e-43 177.9 175 60.0
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 7.9e-43 177.9 174 59.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.0e-42 177.6 175 59.4
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.3e-42 177.2 165 61.2
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.0e-42 176.0 173 58.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.0e-42 176.0 173 58.4
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.0e-42 176.0 168 57.1
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.0e-42 176.0 173 57.8
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.9e-42 175.6 172 53.5
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 6.7e-42 174.9 174 57.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 6.7e-42 174.9 174 57.5
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 8.7e-42 174.5 176 60.8
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.9e-41 173.3 171 59.6
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.3e-41 172.6 174 58.6
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 3.3e-41 172.6 170 60.0
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.3e-41 172.2 172 54.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 4.3e-41 172.2 173 60.1
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 5.7e-41 171.8 171 59.1
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 9.7e-41 171.0 170 57.6
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.3e-40 170.6 183 56.8
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.6e-40 170.2 171 56.1
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.6e-40 170.2 174 58.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.6e-40 170.2 171 56.7
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.8e-40 169.5 175 57.1
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.7e-40 169.1 171 55.0
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 4.8e-40 168.7 166 59.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 4.8e-40 168.7 164 58.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 4.8e-40 168.7 165 57.0
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.1e-39 167.5 165 56.4
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.4e-39 167.2 165 60.6
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.8e-39 166.8 183 55.7
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.8e-39 166.8 183 55.7
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 3.1e-39 166.0 137 69.3
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 2.0e-38 163.3 168 55.4
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.6e-38 162.9 170 53.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.4e-38 162.5 170 53.5
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 5.9e-38 161.8 168 54.8
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.0e-37 161.0 171 56.7
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.0e-37 161.0 175 57.7
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.0e-37 161.0 168 54.2
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.2e-37 159.8 139 64.7
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 5.0e-37 158.7 186 51.1
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 5.0e-37 158.7 175 54.9
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.4e-36 157.1 172 52.3
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.9e-36 156.8 166 54.8
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.9e-36 156.8 139 63.3
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.9e-36 156.8 172 52.3
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.9e-36 156.8 173 54.3
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.2e-36 156.0 161 57.1
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 4.2e-36 155.6 184 51.1
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 5.5e-36 155.2 163 54.0
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.6e-35 153.7 166 56.0
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.6e-35 153.7 175 54.9
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 6.1e-35 151.8 132 63.6
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 7.9e-35 151.4 132 62.9
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 7.9e-35 151.4 132 62.9
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.3e-34 149.8 135 63.0
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.8e-34 147.9 185 51.9
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.7e-32 143.7 165 50.9
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-31 140.2 120 64.2
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.4e-31 139.8 174 50.6
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.4e-31 139.8 163 52.1
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.6e-30 136.3 164 50.6
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.2e-27 127.5 169 49.7
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.7e-27 126.3 115 62.6
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.7e-26 121.7 191 44.0
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.3e-24 117.5 196 40.3
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.7e-24 117.1 134 51.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.8e-23 113.6 170 42.9
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.1e-23 112.8 111 54.1
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.1e-23 111.3 166 44.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-22 110.9 98 66.3
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.7e-19 99.8 166 40.4
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.0e-19 98.2 175 38.9
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.0e-17 93.6 167 40.1
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.7e-17 92.0 86 58.1
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 5.3e-15 85.5 55 81.8
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 9.1e-15 84.7 71 66.2
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-14 84.3 172 36.0
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.5e-13 78.6 55 70.9
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.1e-12 77.8 87 51.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.2e-12 75.1 86 44.2
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.2e-06 57.8 53 50.9
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.7e-06 55.1 74 52.7


User provided reference genes

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