Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.2e-117 426.4 204 100.0
SHI15351 Sapria himalayana HOM05D013702 ORTHO05D003665 6.1e-32 141.7 94 78.7
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 6.7e-31 138.3 92 79.3
SHI15386 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-31 138.3 92 79.3
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.3e-21 107.5 86 55.8
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 2.2e-21 106.7 87 57.5
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.8e-21 106.3 85 57.6
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.8e-21 106.3 85 57.6
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 8.2e-21 104.8 86 54.7
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.2e-21 104.8 83 56.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-20 104.4 83 56.6
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.8e-20 103.6 83 56.6
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.8e-20 103.6 86 57.0
SHI27854 Sapria himalayana HOM05D013702 ORTHO05D003665 2.4e-20 103.2 57 89.5
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 3.1e-20 102.8 85 52.9
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 3.1e-20 102.8 83 59.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.1e-20 102.8 83 55.4
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 7.0e-20 101.7 86 54.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.0e-20 101.7 83 55.4
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.6e-19 100.5 86 51.2
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.6e-19 100.5 86 54.7
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.0e-19 100.1 86 51.2
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.6e-19 99.8 86 51.2
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 2.6e-19 99.8 86 57.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.5e-19 99.4 86 51.2
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 4.5e-19 99.0 86 54.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 7.7e-19 98.2 86 51.2
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.7e-19 98.2 86 50.0
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.0e-18 97.8 85 52.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.0e-18 97.8 96 52.1
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.3e-18 97.4 118 44.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.3e-18 97.4 83 53.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.3e-18 97.4 84 52.4
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.7e-18 97.1 86 52.3
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.7e-18 97.1 83 56.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.7e-18 97.1 86 52.3
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-18 96.7 106 46.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 2.2e-18 96.7 91 48.4
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.2e-18 96.7 85 52.9
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.2e-18 96.7 85 52.9
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 2.9e-18 96.3 88 51.1
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.9e-18 96.3 86 48.8
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 3.8e-18 95.9 84 54.8
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 5.0e-18 95.5 85 51.8
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 6.5e-18 95.1 87 49.4
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 6.5e-18 95.1 85 51.8
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 6.5e-18 95.1 87 49.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 8.5e-18 94.7 85 51.8
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 8.5e-18 94.7 87 52.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.1e-17 94.4 88 47.7
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-17 94.4 122 42.6
SHI04614 Sapria himalayana HOM05D000024 ORTHO05D000014 1.1e-17 94.4 84 66.7
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.5e-17 94.0 90 51.1
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.5e-17 94.0 86 48.8
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.5e-17 93.2 85 51.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.5e-17 93.2 86 48.8
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 3.2e-17 92.8 85 50.6
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.2e-17 92.4 84 53.6
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.2e-17 92.4 86 52.3
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 5.5e-17 92.0 86 50.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.5e-17 92.0 88 51.1
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 5.5e-17 92.0 88 51.1
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 5.5e-17 92.0 88 51.1
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 7.2e-17 91.7 86 52.3
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 7.2e-17 91.7 86 52.3
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 7.2e-17 91.7 86 52.3
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 7.2e-17 91.7 86 52.3
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 9.4e-17 91.3 87 51.7
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 9.4e-17 91.3 83 50.6
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.2e-16 90.9 93 49.5
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.2e-16 90.9 91 50.5
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.2e-16 90.9 88 50.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.6e-16 90.5 88 48.9
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.6e-16 90.5 86 47.7
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-16 90.1 106 43.4
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 2.1e-16 90.1 86 46.5
SHI00073 Sapria himalayana HOM05D001092 ORTHO05D000923 2.1e-16 90.1 73 64.4
SHI20812 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-16 90.1 104 54.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.1e-16 90.1 86 50.0
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.1e-16 90.1 86 50.0
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 4.7e-16 89.0 85 47.1
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.7e-16 89.0 85 48.2
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.7e-16 89.0 85 48.2
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 4.7e-16 89.0 57 78.9
SHI17519 Sapria himalayana HOM05D004343 ORTHO05D005695 6.1e-16 88.6 64 71.9
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 6.1e-16 88.6 88 46.6
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.0e-15 87.8 85 43.5
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.0e-15 87.8 86 46.5
SHI52964 Sapria himalayana HOM05D013702 ORTHO05D003665 1.0e-15 87.8 80 61.2
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.4e-15 87.4 83 49.4
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.4e-15 87.4 83 49.4
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.4e-15 87.4 83 49.4
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.8e-15 87.0 85 48.2
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.8e-15 87.0 88 47.7
SHI02702 Sapria himalayana HOM05D003301 ORTHO05D003665 1.8e-15 87.0 64 70.3
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.3e-15 86.7 110 40.9
SHI07290 Sapria himalayana HOM05D000023 ORTHO05D000014 2.3e-15 86.7 72 62.5
SHI32734 Sapria himalayana HOM05D000023 ORTHO05D000014 3.0e-15 86.3 61 68.9
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 5.2e-15 85.5 93 44.1
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.7e-15 85.1 106 41.5
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 8.8e-15 84.7 88 50.0
SHI18215 Sapria himalayana HOM05D013702 ORTHO05D003665 8.8e-15 84.7 80 60.0
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-14 84.3 86 46.5
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.3e-14 82.8 87 48.3
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.3e-14 82.8 87 48.3
SHI24036 Sapria himalayana HOM05D013702 ORTHO05D003665 5.7e-14 82.0 74 59.5
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.5e-14 81.6 86 46.5
SHI02700 Sapria himalayana HOM05D003301 ORTHO05D003665 7.5e-14 81.6 100 51.0
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 9.7e-14 81.3 53 79.2
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.3e-13 80.9 87 46.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.3e-13 80.9 85 45.9
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.3e-13 80.9 70 62.9
SHI02292 Sapria himalayana HOM05D000023 ORTHO05D000002 1.7e-13 80.5 109 48.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 1.7e-13 80.5 60 68.3
SHI12043 Sapria himalayana HOM05D000002 ORTHO05D007327 2.8e-13 79.7 45 84.4
SHI12617 Sapria himalayana HOM05D001217 ORTHO05D001097 3.7e-13 79.3 38 97.4
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 4.8e-13 79.0 88 43.2
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 6.3e-13 78.6 86 41.9
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 8.2e-13 78.2 84 48.8
SHI16025 Sapria himalayana HOM05D000030 ORTHO05D000009 1.1e-12 77.8 39 92.3
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.4e-12 77.4 85 42.4
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.4e-12 77.4 84 41.7
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.4e-12 77.4 85 47.1
SHI32817 Sapria himalayana HOM05D000105 ORTHO05D003665 1.4e-12 77.4 39 92.3
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.4e-12 77.4 83 48.2
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.8e-12 77.0 83 38.6
SHI25270 Sapria himalayana HOM05D004977 ORTHO05D006454 1.8e-12 77.0 45 82.2
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.8e-12 77.0 82 46.3
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 5.3e-12 75.5 86 40.7
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 5.3e-12 75.5 82 45.1
SHI02781 Sapria himalayana HOM05D000023 ORTHO05D000014 9.1e-12 74.7 39 89.7
SHI46266 Sapria himalayana HOM05D003583 ORTHO05D004169 9.1e-12 74.7 73 58.9
SHI46763 Sapria himalayana HOM05D003583 ORTHO05D004169 9.1e-12 74.7 73 58.9
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.2e-11 74.3 92 42.4
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.2e-11 74.3 85 44.7
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.6e-11 73.9 83 42.2
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.0e-11 73.6 85 40.0
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.0e-11 73.6 83 42.2
SHI34075 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-11 72.8 42 76.2
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.5e-11 72.4 84 46.4
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.7e-11 71.6 86 39.5
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.0e-10 71.2 78 43.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.0e-10 71.2 78 43.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.2e-10 70.1 78 42.3
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.5e-10 68.6 43 65.1
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.5e-09 67.4 43 62.8
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.9e-09 67.0 85 40.0
SHI26238 Sapria himalayana HOM05D000240 ORTHO05D002608 2.5e-09 66.6 62 66.1
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.5e-09 66.6 80 43.8
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.2e-09 65.9 85 36.5
SHI26413 Sapria himalayana HOM05D000002 ORTHO05D000001 5.5e-09 65.5 138 35.5
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 7.2e-09 65.1 40 62.5
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 9.4e-09 64.7 54 57.4
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-08 64.3 43 58.1
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-08 64.3 43 60.5
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.2e-08 64.3 43 60.5
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.1e-08 63.5 136 29.4
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.1e-08 63.5 61 63.9
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 2.3e-07 60.1 42 54.8
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 4.0e-07 59.3 62 46.8
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.8e-07 58.5 54 48.1
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.5e-06 57.4 44 70.5
SHI03705 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-06 57.0 51 58.8
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.4e-06 55.8 42 50.0


User provided reference genes

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